Gene : Phvul.004G041300 P. vulgaris v2.1
Defline:  (1 of 14) PF04833 - COBRA-like protein (COBRA) Genomic Order:  449
Name:  ? Phvul.004G041300 Secondary Identifier:  ? PAC:37161695
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.004G041300 0.5kb upstream 0.5kb upstream 4966 true Chr04: 4886998-4891963 Phaseolus vulgaris
Phvul.004G041300 0.5kb upstream 0.5kb upstream 500 false Chr04: 4886998-4887497 Phaseolus vulgaris
Phvul.004G041300 0.5kb downstream 0.5kb downstream 4966 true Chr04: 4887498-4892463 Phaseolus vulgaris
Phvul.004G041300 0.5kb downstream 0.5kb downstream 500 false Chr04: 4891964-4892463 Phaseolus vulgaris
Phvul.004G041300 1.0kb upstream 1.0kb upstream 5466 true Chr04: 4886498-4891963 Phaseolus vulgaris
Phvul.004G041300 1.0kb upstream 1.0kb upstream 1000 false Chr04: 4886498-4887497 Phaseolus vulgaris
Phvul.004G041300 1.0kb downstream 1.0kb downstream 5466 true Chr04: 4887498-4892963 Phaseolus vulgaris
Phvul.004G041300 1.0kb downstream 1.0kb downstream 1000 false Chr04: 4891964-4892963 Phaseolus vulgaris
Phvul.004G041300 2.0kb upstream 2.0kb upstream 6466 true Chr04: 4885498-4891963 Phaseolus vulgaris
Phvul.004G041300 2.0kb upstream 2.0kb upstream 2000 false Chr04: 4885498-4887497 Phaseolus vulgaris
Phvul.004G041300 2.0kb downstream 2.0kb downstream 6466 true Chr04: 4887498-4893963 Phaseolus vulgaris
Phvul.004G041300 2.0kb downstream 2.0kb downstream 2000 false Chr04: 4891964-4893963 Phaseolus vulgaris
Phvul.004G041300 5.0kb upstream 5.0kb upstream 9466 true Chr04: 4882498-4891963 Phaseolus vulgaris
Phvul.004G041300 5.0kb upstream 5.0kb upstream 5000 false Chr04: 4882498-4887497 Phaseolus vulgaris
Phvul.004G041300 5.0kb downstream 5.0kb downstream 9466 true Chr04: 4887498-4896963 Phaseolus vulgaris
Phvul.004G041300 5.0kb downstream 5.0kb downstream 5000 false Chr04: 4891964-4896963 Phaseolus vulgaris
Phvul.004G041300 10.0kb upstream 10.0kb upstream 14466 true Chr04: 4877498-4891963 Phaseolus vulgaris
Phvul.004G041300 10.0kb upstream 10.0kb upstream 10000 false Chr04: 4877498-4887497 Phaseolus vulgaris
Phvul.004G041300 10.0kb downstream 10.0kb downstream 14466 true Chr04: 4887498-4901963 Phaseolus vulgaris
Phvul.004G041300 10.0kb downstream 10.0kb downstream 10000 false Chr04: 4891964-4901963 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311980 5265 Fabidae View MSA
124062933 5270 Rosid View MSA
123750183 5271 Pentapetalae View MSA
122789403 5272 Eudicot View MSA
122044037 5273 Angiosperm View MSA
121349086 5274 Embryophyte View MSA
123381159 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.881599 0.0 3.11024    
cufflinks 1.05336 0.0 3.64546    
cufflinks 0.280452 0.0 1.0885 Low Low
cufflinks 1.46786 0.0 4.8992    
cufflinks 0.572931 0.0 2.11049 Low  
cufflinks 0.239513 0.0 0.94287 Low Low
cufflinks 1.24598 0.0 4.22816    
cufflinks 3.07253 0.0 9.39341   High
cufflinks 0.372277 0.0 1.41551 Low  
cufflinks 0.88693 0.0 3.13301    
cufflinks 0.717116 0.0 2.59165    

0 Strain