Gene : Phvul.004G041600 P. vulgaris v2.1
Defline:  (1 of 5) K13379 - reversibly glycosylated polypeptide / UDP-arabinopyranose mutase (RGP, UTM) Genomic Order:  452
Name:  ? Phvul.004G041600 Secondary Identifier:  ? PAC:37162967
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.004G041600 0.5kb upstream 0.5kb upstream 3454 true Chr04: 4913500-4916953 Phaseolus vulgaris
Phvul.004G041600 0.5kb upstream 0.5kb upstream 500 false Chr04: 4916454-4916953 Phaseolus vulgaris
Phvul.004G041600 0.5kb downstream 0.5kb downstream 3454 true Chr04: 4913000-4916453 Phaseolus vulgaris
Phvul.004G041600 0.5kb downstream 0.5kb downstream 500 false Chr04: 4913000-4913499 Phaseolus vulgaris
Phvul.004G041600 1.0kb upstream 1.0kb upstream 3954 true Chr04: 4913500-4917453 Phaseolus vulgaris
Phvul.004G041600 1.0kb upstream 1.0kb upstream 1000 false Chr04: 4916454-4917453 Phaseolus vulgaris
Phvul.004G041600 1.0kb downstream 1.0kb downstream 3954 true Chr04: 4912500-4916453 Phaseolus vulgaris
Phvul.004G041600 1.0kb downstream 1.0kb downstream 1000 false Chr04: 4912500-4913499 Phaseolus vulgaris
Phvul.004G041600 2.0kb upstream 2.0kb upstream 4954 true Chr04: 4913500-4918453 Phaseolus vulgaris
Phvul.004G041600 2.0kb upstream 2.0kb upstream 2000 false Chr04: 4916454-4918453 Phaseolus vulgaris
Phvul.004G041600 2.0kb downstream 2.0kb downstream 4954 true Chr04: 4911500-4916453 Phaseolus vulgaris
Phvul.004G041600 2.0kb downstream 2.0kb downstream 2000 false Chr04: 4911500-4913499 Phaseolus vulgaris
Phvul.004G041600 5.0kb upstream 5.0kb upstream 7954 true Chr04: 4913500-4921453 Phaseolus vulgaris
Phvul.004G041600 5.0kb upstream 5.0kb upstream 5000 false Chr04: 4916454-4921453 Phaseolus vulgaris
Phvul.004G041600 5.0kb downstream 5.0kb downstream 7954 true Chr04: 4908500-4916453 Phaseolus vulgaris
Phvul.004G041600 5.0kb downstream 5.0kb downstream 5000 false Chr04: 4908500-4913499 Phaseolus vulgaris
Phvul.004G041600 10.0kb upstream 10.0kb upstream 12954 true Chr04: 4913500-4926453 Phaseolus vulgaris
Phvul.004G041600 10.0kb upstream 10.0kb upstream 10000 false Chr04: 4916454-4926453 Phaseolus vulgaris
Phvul.004G041600 10.0kb downstream 10.0kb downstream 12954 true Chr04: 4903500-4916453 Phaseolus vulgaris
Phvul.004G041600 10.0kb downstream 10.0kb downstream 10000 false Chr04: 4903500-4913499 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310399 5265 Fabidae View MSA
124072741 5270 Rosid View MSA
123747058 5271 Pentapetalae View MSA
122796837 5272 Eudicot View MSA
122049597 5273 Angiosperm View MSA
121348829 5274 Embryophyte View MSA
123424490 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.47861 0.0 10.6145    
cufflinks 7.50983 0.0 21.0904    
cufflinks 1.04489 0.0 3.63031   Low
cufflinks 22.3389 0.0 58.0625    
cufflinks 4.11296 0.0 12.3295    
cufflinks 4.29557 0.0 12.7694    
cufflinks 25.4413 0.0 65.9127   High
cufflinks 41.005 0.0 106.328 High High
cufflinks 31.4496 0.0 81.2927 High High
cufflinks 1.20167 0.0 4.14566   Low
cufflinks 3.82799 0.0 11.6152    

0 Strain