Gene : Phvul.004G047900 P. vulgaris v2.1
Defline:  (1 of 3) K00318 - proline dehydrogenase (PRODH) Genomic Order:  513
Name:  ? Phvul.004G047900 Secondary Identifier:  ? PAC:37163869
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris CITRULBIO-PWY Phaseolus vulgaris pathologic  
Pvulgaris PROUT-PWY Phaseolus vulgaris pathologic  
Pvulgaris PWY-6922 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.004G047900 0.5kb upstream 0.5kb upstream 3873 true Chr04: 5795934-5799806 Phaseolus vulgaris
Phvul.004G047900 0.5kb upstream 0.5kb upstream 500 false Chr04: 5799307-5799806 Phaseolus vulgaris
Phvul.004G047900 0.5kb downstream 0.5kb downstream 3873 true Chr04: 5795434-5799306 Phaseolus vulgaris
Phvul.004G047900 0.5kb downstream 0.5kb downstream 500 false Chr04: 5795434-5795933 Phaseolus vulgaris
Phvul.004G047900 1.0kb upstream 1.0kb upstream 4373 true Chr04: 5795934-5800306 Phaseolus vulgaris
Phvul.004G047900 1.0kb upstream 1.0kb upstream 1000 false Chr04: 5799307-5800306 Phaseolus vulgaris
Phvul.004G047900 1.0kb downstream 1.0kb downstream 4373 true Chr04: 5794934-5799306 Phaseolus vulgaris
Phvul.004G047900 1.0kb downstream 1.0kb downstream 1000 false Chr04: 5794934-5795933 Phaseolus vulgaris
Phvul.004G047900 2.0kb upstream 2.0kb upstream 5373 true Chr04: 5795934-5801306 Phaseolus vulgaris
Phvul.004G047900 2.0kb upstream 2.0kb upstream 2000 false Chr04: 5799307-5801306 Phaseolus vulgaris
Phvul.004G047900 2.0kb downstream 2.0kb downstream 5373 true Chr04: 5793934-5799306 Phaseolus vulgaris
Phvul.004G047900 2.0kb downstream 2.0kb downstream 2000 false Chr04: 5793934-5795933 Phaseolus vulgaris
Phvul.004G047900 5.0kb upstream 5.0kb upstream 8373 true Chr04: 5795934-5804306 Phaseolus vulgaris
Phvul.004G047900 5.0kb upstream 5.0kb upstream 5000 false Chr04: 5799307-5804306 Phaseolus vulgaris
Phvul.004G047900 5.0kb downstream 5.0kb downstream 8373 true Chr04: 5790934-5799306 Phaseolus vulgaris
Phvul.004G047900 5.0kb downstream 5.0kb downstream 5000 false Chr04: 5790934-5795933 Phaseolus vulgaris
Phvul.004G047900 10.0kb upstream 10.0kb upstream 13373 true Chr04: 5795934-5809306 Phaseolus vulgaris
Phvul.004G047900 10.0kb upstream 10.0kb upstream 10000 false Chr04: 5799307-5809306 Phaseolus vulgaris
Phvul.004G047900 10.0kb downstream 10.0kb downstream 13373 true Chr04: 5785934-5799306 Phaseolus vulgaris
Phvul.004G047900 10.0kb downstream 10.0kb downstream 10000 false Chr04: 5785934-5795933 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309923 5265 Fabidae View MSA
124068346 5270 Rosid View MSA
123743697 5271 Pentapetalae View MSA
122792525 5272 Eudicot View MSA
122047709 5273 Angiosperm View MSA
121345691 5274 Embryophyte View MSA
123427745 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 36.2594 0.0 95.2845 High High
cufflinks 26.616 0.0 69.0691   High
cufflinks 1.09553 0.0 3.62694   Low
cufflinks 8.44506 0.0 22.5317    
cufflinks 9.73514 0.0 25.743    
cufflinks 0.575471 0.0 2.04103   Low
cufflinks 7.75267 0.0 20.7542    
cufflinks 15.426 0.0 39.9682    
cufflinks 16.3823 0.0 42.377    
cufflinks 8.98141 0.0 23.8996    
cufflinks 2.24877 0.0 6.82342    

0 Strain