Gene : Phvul.004G048300 P. vulgaris v2.1
Defline:  (1 of 1) 4.2.1.122 - Tryptophan synthase (indole-salvaging) / Tryptophan synthase beta-2 Genomic Order:  517
Name:  ? Phvul.004G048300 Secondary Identifier:  ? PAC:37162255
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris TRPSYN-PWY Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.004G048300 0.5kb upstream 0.5kb upstream 3828 true Chr04: 5868138-5871965 Phaseolus vulgaris
Phvul.004G048300 0.5kb upstream 0.5kb upstream 500 false Chr04: 5868138-5868637 Phaseolus vulgaris
Phvul.004G048300 0.5kb downstream 0.5kb downstream 3828 true Chr04: 5868638-5872465 Phaseolus vulgaris
Phvul.004G048300 0.5kb downstream 0.5kb downstream 500 false Chr04: 5871966-5872465 Phaseolus vulgaris
Phvul.004G048300 1.0kb upstream 1.0kb upstream 4328 true Chr04: 5867638-5871965 Phaseolus vulgaris
Phvul.004G048300 1.0kb upstream 1.0kb upstream 1000 false Chr04: 5867638-5868637 Phaseolus vulgaris
Phvul.004G048300 1.0kb downstream 1.0kb downstream 4328 true Chr04: 5868638-5872965 Phaseolus vulgaris
Phvul.004G048300 1.0kb downstream 1.0kb downstream 1000 false Chr04: 5871966-5872965 Phaseolus vulgaris
Phvul.004G048300 2.0kb upstream 2.0kb upstream 5328 true Chr04: 5866638-5871965 Phaseolus vulgaris
Phvul.004G048300 2.0kb upstream 2.0kb upstream 2000 false Chr04: 5866638-5868637 Phaseolus vulgaris
Phvul.004G048300 2.0kb downstream 2.0kb downstream 5328 true Chr04: 5868638-5873965 Phaseolus vulgaris
Phvul.004G048300 2.0kb downstream 2.0kb downstream 2000 false Chr04: 5871966-5873965 Phaseolus vulgaris
Phvul.004G048300 5.0kb upstream 5.0kb upstream 8328 true Chr04: 5863638-5871965 Phaseolus vulgaris
Phvul.004G048300 5.0kb upstream 5.0kb upstream 5000 false Chr04: 5863638-5868637 Phaseolus vulgaris
Phvul.004G048300 5.0kb downstream 5.0kb downstream 8328 true Chr04: 5868638-5876965 Phaseolus vulgaris
Phvul.004G048300 5.0kb downstream 5.0kb downstream 5000 false Chr04: 5871966-5876965 Phaseolus vulgaris
Phvul.004G048300 10.0kb upstream 10.0kb upstream 13328 true Chr04: 5858638-5871965 Phaseolus vulgaris
Phvul.004G048300 10.0kb upstream 10.0kb upstream 10000 false Chr04: 5858638-5868637 Phaseolus vulgaris
Phvul.004G048300 10.0kb downstream 10.0kb downstream 13328 true Chr04: 5868638-5881965 Phaseolus vulgaris
Phvul.004G048300 10.0kb downstream 10.0kb downstream 10000 false Chr04: 5871966-5881965 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307865 5265 Fabidae View MSA
124065122 5270 Rosid View MSA
123740538 5271 Pentapetalae View MSA
122790993 5272 Eudicot View MSA
122043348 5273 Angiosperm View MSA
121348084 5274 Embryophyte View MSA
123380724 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.8593 0.0 33.7808    
cufflinks 24.4887 0.0 63.3025   High
cufflinks 6.60364 0.0 18.2297    
cufflinks 19.5173 0.0 50.5737    
cufflinks 11.8915 0.0 31.5009    
cufflinks 11.7041 0.0 30.9288    
cufflinks 6.0519 0.0 16.8675   Low
cufflinks 4.75693 0.0 13.5347   Low
cufflinks 6.71646 0.0 18.5629    
cufflinks 19.8191 0.0 51.3118    
cufflinks 19.6736 0.0 50.9608    

0 Strain