Gene : Phvul.004G048600 P. vulgaris v2.1
Genomic Order:  520 Name:  ? Phvul.004G048600
Secondary Identifier:  ? PAC:37162487
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.004G048600 0.5kb upstream 0.5kb upstream 1103 true Chr04: 5920169-5921271 Phaseolus vulgaris
Phvul.004G048600 0.5kb upstream 0.5kb upstream 500 false Chr04: 5920772-5921271 Phaseolus vulgaris
Phvul.004G048600 0.5kb downstream 0.5kb downstream 1103 true Chr04: 5919669-5920771 Phaseolus vulgaris
Phvul.004G048600 0.5kb downstream 0.5kb downstream 500 false Chr04: 5919669-5920168 Phaseolus vulgaris
Phvul.004G048600 1.0kb upstream 1.0kb upstream 1603 true Chr04: 5920169-5921771 Phaseolus vulgaris
Phvul.004G048600 1.0kb upstream 1.0kb upstream 1000 false Chr04: 5920772-5921771 Phaseolus vulgaris
Phvul.004G048600 1.0kb downstream 1.0kb downstream 1603 true Chr04: 5919169-5920771 Phaseolus vulgaris
Phvul.004G048600 1.0kb downstream 1.0kb downstream 1000 false Chr04: 5919169-5920168 Phaseolus vulgaris
Phvul.004G048600 2.0kb upstream 2.0kb upstream 2603 true Chr04: 5920169-5922771 Phaseolus vulgaris
Phvul.004G048600 2.0kb upstream 2.0kb upstream 2000 false Chr04: 5920772-5922771 Phaseolus vulgaris
Phvul.004G048600 2.0kb downstream 2.0kb downstream 2603 true Chr04: 5918169-5920771 Phaseolus vulgaris
Phvul.004G048600 2.0kb downstream 2.0kb downstream 2000 false Chr04: 5918169-5920168 Phaseolus vulgaris
Phvul.004G048600 5.0kb upstream 5.0kb upstream 5603 true Chr04: 5920169-5925771 Phaseolus vulgaris
Phvul.004G048600 5.0kb upstream 5.0kb upstream 5000 false Chr04: 5920772-5925771 Phaseolus vulgaris
Phvul.004G048600 5.0kb downstream 5.0kb downstream 5603 true Chr04: 5915169-5920771 Phaseolus vulgaris
Phvul.004G048600 5.0kb downstream 5.0kb downstream 5000 false Chr04: 5915169-5920168 Phaseolus vulgaris
Phvul.004G048600 10.0kb upstream 10.0kb upstream 10603 true Chr04: 5920169-5930771 Phaseolus vulgaris
Phvul.004G048600 10.0kb upstream 10.0kb upstream 10000 false Chr04: 5920772-5930771 Phaseolus vulgaris
Phvul.004G048600 10.0kb downstream 10.0kb downstream 10603 true Chr04: 5910169-5920771 Phaseolus vulgaris
Phvul.004G048600 10.0kb downstream 10.0kb downstream 10000 false Chr04: 5910169-5920168 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122027470 5273 Angiosperm View MSA
122254216 5265 Fabidae View MSA
124037463 5270 Rosid View MSA
123753101 5271 Pentapetalae View MSA
122794224 5272 Eudicot View MSA
121297119 5274 Embryophyte View MSA
123335205 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.459116 0.0 1.9742    
cufflinks 0.627481 0.0 2.6182    
cufflinks 0.754246 0.0 3.09123    
cufflinks 7.7627 0.0 26.1539   High
cufflinks 1.45187 0.0 5.71634    
cufflinks 1.13623 0.0 4.51399    
cufflinks 0.368152 0.0 1.61052 Low Low
cufflinks 3.48709 0.0 12.5603   High
cufflinks 0.402111 0.0 1.74634 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 1.16111 0.0 4.62614    

0 Strain