Gene : Phvul.004G023900 P. vulgaris v2.1
Defline:  (1 of 1) 2.1.1.171 - 16S rRNA (guanine(966)-N(2))-methyltransferase / M(2)G966 methyltransferase Genomic Order:  275
Name:  ? Phvul.004G023900 Secondary Identifier:  ? PAC:37163649
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.004G023900 0.5kb upstream 0.5kb upstream 5513 true Chr04: 2749650-2755162 Phaseolus vulgaris
Phvul.004G023900 0.5kb upstream 0.5kb upstream 500 false Chr04: 2754663-2755162 Phaseolus vulgaris
Phvul.004G023900 0.5kb downstream 0.5kb downstream 5513 true Chr04: 2749150-2754662 Phaseolus vulgaris
Phvul.004G023900 0.5kb downstream 0.5kb downstream 500 false Chr04: 2749150-2749649 Phaseolus vulgaris
Phvul.004G023900 1.0kb upstream 1.0kb upstream 6013 true Chr04: 2749650-2755662 Phaseolus vulgaris
Phvul.004G023900 1.0kb upstream 1.0kb upstream 1000 false Chr04: 2754663-2755662 Phaseolus vulgaris
Phvul.004G023900 1.0kb downstream 1.0kb downstream 6013 true Chr04: 2748650-2754662 Phaseolus vulgaris
Phvul.004G023900 1.0kb downstream 1.0kb downstream 1000 false Chr04: 2748650-2749649 Phaseolus vulgaris
Phvul.004G023900 2.0kb upstream 2.0kb upstream 7013 true Chr04: 2749650-2756662 Phaseolus vulgaris
Phvul.004G023900 2.0kb upstream 2.0kb upstream 2000 false Chr04: 2754663-2756662 Phaseolus vulgaris
Phvul.004G023900 2.0kb downstream 2.0kb downstream 7013 true Chr04: 2747650-2754662 Phaseolus vulgaris
Phvul.004G023900 2.0kb downstream 2.0kb downstream 2000 false Chr04: 2747650-2749649 Phaseolus vulgaris
Phvul.004G023900 5.0kb upstream 5.0kb upstream 10013 true Chr04: 2749650-2759662 Phaseolus vulgaris
Phvul.004G023900 5.0kb upstream 5.0kb upstream 5000 false Chr04: 2754663-2759662 Phaseolus vulgaris
Phvul.004G023900 5.0kb downstream 5.0kb downstream 10013 true Chr04: 2744650-2754662 Phaseolus vulgaris
Phvul.004G023900 5.0kb downstream 5.0kb downstream 5000 false Chr04: 2744650-2749649 Phaseolus vulgaris
Phvul.004G023900 10.0kb upstream 10.0kb upstream 15013 true Chr04: 2749650-2764662 Phaseolus vulgaris
Phvul.004G023900 10.0kb upstream 10.0kb upstream 10000 false Chr04: 2754663-2764662 Phaseolus vulgaris
Phvul.004G023900 10.0kb downstream 10.0kb downstream 15013 true Chr04: 2739650-2754662 Phaseolus vulgaris
Phvul.004G023900 10.0kb downstream 10.0kb downstream 10000 false Chr04: 2739650-2749649 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300830 5265 Fabidae View MSA
124067433 5270 Rosid View MSA
123738350 5271 Pentapetalae View MSA
122790005 5272 Eudicot View MSA
122044279 5273 Angiosperm View MSA
121347600 5274 Embryophyte View MSA
123423855 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 58.6186 0.0 156.126 High High
cufflinks 7.2241 0.0 20.0491    
cufflinks 13.3984 0.0 35.2759    
cufflinks 19.6217 0.0 51.0358    
cufflinks 5.97367 0.0 16.9679    
cufflinks 9.00303 0.0 24.4709    
cufflinks 2.72586 0.0 8.38672   Low
cufflinks 2.34059 0.0 7.28993   Low
cufflinks 2.29918 0.0 7.2305   Low
cufflinks 7.99411 0.0 22.0248    
cufflinks 5.45992 0.0 15.6158    

0 Strain