Gene : Phvul.004G026200 P. vulgaris v2.1
Defline:  (1 of 2) K09272 - structure-specific recognition protein 1 (SSRP1) Genomic Order:  298
Name:  ? Phvul.004G026200 Secondary Identifier:  ? PAC:37162776
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.004G026200 0.5kb upstream 0.5kb upstream 7021 true Chr04: 2944721-2951741 Phaseolus vulgaris
Phvul.004G026200 0.5kb upstream 0.5kb upstream 500 false Chr04: 2944721-2945220 Phaseolus vulgaris
Phvul.004G026200 0.5kb downstream 0.5kb downstream 7021 true Chr04: 2945221-2952241 Phaseolus vulgaris
Phvul.004G026200 0.5kb downstream 0.5kb downstream 500 false Chr04: 2951742-2952241 Phaseolus vulgaris
Phvul.004G026200 1.0kb upstream 1.0kb upstream 7521 true Chr04: 2944221-2951741 Phaseolus vulgaris
Phvul.004G026200 1.0kb upstream 1.0kb upstream 1000 false Chr04: 2944221-2945220 Phaseolus vulgaris
Phvul.004G026200 1.0kb downstream 1.0kb downstream 7521 true Chr04: 2945221-2952741 Phaseolus vulgaris
Phvul.004G026200 1.0kb downstream 1.0kb downstream 1000 false Chr04: 2951742-2952741 Phaseolus vulgaris
Phvul.004G026200 2.0kb upstream 2.0kb upstream 8521 true Chr04: 2943221-2951741 Phaseolus vulgaris
Phvul.004G026200 2.0kb upstream 2.0kb upstream 2000 false Chr04: 2943221-2945220 Phaseolus vulgaris
Phvul.004G026200 2.0kb downstream 2.0kb downstream 8521 true Chr04: 2945221-2953741 Phaseolus vulgaris
Phvul.004G026200 2.0kb downstream 2.0kb downstream 2000 false Chr04: 2951742-2953741 Phaseolus vulgaris
Phvul.004G026200 5.0kb upstream 5.0kb upstream 11521 true Chr04: 2940221-2951741 Phaseolus vulgaris
Phvul.004G026200 5.0kb upstream 5.0kb upstream 5000 false Chr04: 2940221-2945220 Phaseolus vulgaris
Phvul.004G026200 5.0kb downstream 5.0kb downstream 11521 true Chr04: 2945221-2956741 Phaseolus vulgaris
Phvul.004G026200 5.0kb downstream 5.0kb downstream 5000 false Chr04: 2951742-2956741 Phaseolus vulgaris
Phvul.004G026200 10.0kb upstream 10.0kb upstream 16521 true Chr04: 2935221-2951741 Phaseolus vulgaris
Phvul.004G026200 10.0kb upstream 10.0kb upstream 10000 false Chr04: 2935221-2945220 Phaseolus vulgaris
Phvul.004G026200 10.0kb downstream 10.0kb downstream 16521 true Chr04: 2945221-2961741 Phaseolus vulgaris
Phvul.004G026200 10.0kb downstream 10.0kb downstream 10000 false Chr04: 2951742-2961741 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302109 5265 Fabidae View MSA
124060640 5270 Rosid View MSA
123744635 5271 Pentapetalae View MSA
122790158 5272 Eudicot View MSA
122041570 5273 Angiosperm View MSA
121347609 5274 Embryophyte View MSA
123424150 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.8903 0.0 41.078    
cufflinks 30.2854 0.0 79.427   High
cufflinks 15.0153 0.0 38.8293   Low
cufflinks 10.9856 0.0 28.7927   Low
cufflinks 20.7449 0.0 53.6452    
cufflinks 22.5367 0.0 58.4593    
cufflinks 25.6814 0.0 66.8678    
cufflinks 24.9747 0.0 65.0981    
cufflinks 21.5712 0.0 55.8564    
cufflinks 36.996 0.0 98.1736 High High
cufflinks 24.1437 0.0 62.6217    

0 Strain