Gene : Phvul.004G011700 P. vulgaris v2.1
Defline:  (1 of 2) PTHR23068//PTHR23068:SF12 - DNA CYTOSINE-5- -METHYLTRANSFERASE 3-RELATED // SUBFAMILY NOT NAMED Genomic Order:  203
Name:  ? Phvul.004G011700 Secondary Identifier:  ? PAC:37162725
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0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.004G011700 0.5kb upstream 0.5kb upstream 11092 true Chr04: 1963311-1974402 Phaseolus vulgaris
Phvul.004G011700 0.5kb upstream 0.5kb upstream 500 false Chr04: 1973903-1974402 Phaseolus vulgaris
Phvul.004G011700 0.5kb downstream 0.5kb downstream 11092 true Chr04: 1962811-1973902 Phaseolus vulgaris
Phvul.004G011700 0.5kb downstream 0.5kb downstream 500 false Chr04: 1962811-1963310 Phaseolus vulgaris
Phvul.004G011700 1.0kb upstream 1.0kb upstream 11592 true Chr04: 1963311-1974902 Phaseolus vulgaris
Phvul.004G011700 1.0kb upstream 1.0kb upstream 1000 false Chr04: 1973903-1974902 Phaseolus vulgaris
Phvul.004G011700 1.0kb downstream 1.0kb downstream 11592 true Chr04: 1962311-1973902 Phaseolus vulgaris
Phvul.004G011700 1.0kb downstream 1.0kb downstream 1000 false Chr04: 1962311-1963310 Phaseolus vulgaris
Phvul.004G011700 2.0kb upstream 2.0kb upstream 12592 true Chr04: 1963311-1975902 Phaseolus vulgaris
Phvul.004G011700 2.0kb upstream 2.0kb upstream 2000 false Chr04: 1973903-1975902 Phaseolus vulgaris
Phvul.004G011700 2.0kb downstream 2.0kb downstream 12592 true Chr04: 1961311-1973902 Phaseolus vulgaris
Phvul.004G011700 2.0kb downstream 2.0kb downstream 2000 false Chr04: 1961311-1963310 Phaseolus vulgaris
Phvul.004G011700 5.0kb upstream 5.0kb upstream 15592 true Chr04: 1963311-1978902 Phaseolus vulgaris
Phvul.004G011700 5.0kb upstream 5.0kb upstream 5000 false Chr04: 1973903-1978902 Phaseolus vulgaris
Phvul.004G011700 5.0kb downstream 5.0kb downstream 15592 true Chr04: 1958311-1973902 Phaseolus vulgaris
Phvul.004G011700 5.0kb downstream 5.0kb downstream 5000 false Chr04: 1958311-1963310 Phaseolus vulgaris
Phvul.004G011700 10.0kb upstream 10.0kb upstream 20592 true Chr04: 1963311-1983902 Phaseolus vulgaris
Phvul.004G011700 10.0kb upstream 10.0kb upstream 10000 false Chr04: 1973903-1983902 Phaseolus vulgaris
Phvul.004G011700 10.0kb downstream 10.0kb downstream 20592 true Chr04: 1953311-1973902 Phaseolus vulgaris
Phvul.004G011700 10.0kb downstream 10.0kb downstream 10000 false Chr04: 1953311-1963310 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311248 5265 Fabidae View MSA
124062012 5270 Rosid View MSA
123745189 5271 Pentapetalae View MSA
122788994 5272 Eudicot View MSA
122049231 5273 Angiosperm View MSA
121350699 5274 Embryophyte View MSA
123381851 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.63708 0.0 17.9567   Low
cufflinks 7.25905 0.0 19.5428   Low
cufflinks 15.3995 0.0 39.8591    
cufflinks 6.6999 0.0 18.2947   Low
cufflinks 10.3227 0.0 27.251    
cufflinks 14.733 0.0 38.17    
cufflinks 12.8839 0.0 33.488    
cufflinks 21.7071 0.0 56.2095   High
cufflinks 12.456 0.0 32.4563    
cufflinks 11.1273 0.0 29.1465    
cufflinks 9.34332 0.0 24.7642    

0 Strain