Gene : Phvul.004G005000 P. vulgaris v2.1
Defline:  (1 of 1) PTHR31426:SF4 - GENOMIC DNA, CHROMOSOME 3, P1 CLONE: MMJ24 Genomic Order:  45
Name:  ? Phvul.004G005000 Secondary Identifier:  ? PAC:37162485
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.004G005000 0.5kb upstream 0.5kb upstream 4547 true Chr04: 278294-282840 Phaseolus vulgaris
Phvul.004G005000 0.5kb upstream 0.5kb upstream 500 false Chr04: 278294-278793 Phaseolus vulgaris
Phvul.004G005000 0.5kb downstream 0.5kb downstream 4547 true Chr04: 278794-283340 Phaseolus vulgaris
Phvul.004G005000 0.5kb downstream 0.5kb downstream 500 false Chr04: 282841-283340 Phaseolus vulgaris
Phvul.004G005000 1.0kb upstream 1.0kb upstream 5047 true Chr04: 277794-282840 Phaseolus vulgaris
Phvul.004G005000 1.0kb upstream 1.0kb upstream 1000 false Chr04: 277794-278793 Phaseolus vulgaris
Phvul.004G005000 1.0kb downstream 1.0kb downstream 5047 true Chr04: 278794-283840 Phaseolus vulgaris
Phvul.004G005000 1.0kb downstream 1.0kb downstream 1000 false Chr04: 282841-283840 Phaseolus vulgaris
Phvul.004G005000 2.0kb upstream 2.0kb upstream 6047 true Chr04: 276794-282840 Phaseolus vulgaris
Phvul.004G005000 2.0kb upstream 2.0kb upstream 2000 false Chr04: 276794-278793 Phaseolus vulgaris
Phvul.004G005000 2.0kb downstream 2.0kb downstream 6047 true Chr04: 278794-284840 Phaseolus vulgaris
Phvul.004G005000 2.0kb downstream 2.0kb downstream 2000 false Chr04: 282841-284840 Phaseolus vulgaris
Phvul.004G005000 5.0kb upstream 5.0kb upstream 9047 true Chr04: 273794-282840 Phaseolus vulgaris
Phvul.004G005000 5.0kb upstream 5.0kb upstream 5000 false Chr04: 273794-278793 Phaseolus vulgaris
Phvul.004G005000 5.0kb downstream 5.0kb downstream 9047 true Chr04: 278794-287840 Phaseolus vulgaris
Phvul.004G005000 5.0kb downstream 5.0kb downstream 5000 false Chr04: 282841-287840 Phaseolus vulgaris
Phvul.004G005000 10.0kb upstream 10.0kb upstream 14047 true Chr04: 268794-282840 Phaseolus vulgaris
Phvul.004G005000 10.0kb upstream 10.0kb upstream 10000 false Chr04: 268794-278793 Phaseolus vulgaris
Phvul.004G005000 10.0kb downstream 10.0kb downstream 14047 true Chr04: 278794-292840 Phaseolus vulgaris
Phvul.004G005000 10.0kb downstream 10.0kb downstream 10000 false Chr04: 282841-292840 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308546 5265 Fabidae View MSA
124050313 5270 Rosid View MSA
123738349 5271 Pentapetalae View MSA
122792203 5272 Eudicot View MSA
122044753 5273 Angiosperm View MSA
121350560 5274 Embryophyte View MSA
123381792 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.96971 0.0 8.46126    
cufflinks 3.85327 0.0 10.7205    
cufflinks 6.01544 0.0 16.0769   High
cufflinks 1.62202 0.0 5.01238   Low
cufflinks 3.22405 0.0 9.21102    
cufflinks 4.98045 0.0 13.5311    
cufflinks 4.57601 0.0 12.5058    
cufflinks 4.91509 0.0 13.3115    
cufflinks 4.15926 0.0 11.4768    
cufflinks 3.68431 0.0 10.317    
cufflinks 2.71922 0.0 7.86173    

0 Strain