Gene : Phvul.004G009809 P. vulgaris v2.1
Defline:  (1 of 197) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  132
Name:  ? Phvul.004G009809 Secondary Identifier:  ? PAC:37163821
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.004G009809 0.5kb upstream 0.5kb upstream 4520 true Chr04: 1237533-1242052 Phaseolus vulgaris
Phvul.004G009809 0.5kb upstream 0.5kb upstream 500 false Chr04: 1241553-1242052 Phaseolus vulgaris
Phvul.004G009809 0.5kb downstream 0.5kb downstream 4520 true Chr04: 1237033-1241552 Phaseolus vulgaris
Phvul.004G009809 0.5kb downstream 0.5kb downstream 500 false Chr04: 1237033-1237532 Phaseolus vulgaris
Phvul.004G009809 1.0kb upstream 1.0kb upstream 5020 true Chr04: 1237533-1242552 Phaseolus vulgaris
Phvul.004G009809 1.0kb upstream 1.0kb upstream 1000 false Chr04: 1241553-1242552 Phaseolus vulgaris
Phvul.004G009809 1.0kb downstream 1.0kb downstream 5020 true Chr04: 1236533-1241552 Phaseolus vulgaris
Phvul.004G009809 1.0kb downstream 1.0kb downstream 1000 false Chr04: 1236533-1237532 Phaseolus vulgaris
Phvul.004G009809 2.0kb upstream 2.0kb upstream 6020 true Chr04: 1237533-1243552 Phaseolus vulgaris
Phvul.004G009809 2.0kb upstream 2.0kb upstream 2000 false Chr04: 1241553-1243552 Phaseolus vulgaris
Phvul.004G009809 2.0kb downstream 2.0kb downstream 6020 true Chr04: 1235533-1241552 Phaseolus vulgaris
Phvul.004G009809 2.0kb downstream 2.0kb downstream 2000 false Chr04: 1235533-1237532 Phaseolus vulgaris
Phvul.004G009809 5.0kb upstream 5.0kb upstream 9020 true Chr04: 1237533-1246552 Phaseolus vulgaris
Phvul.004G009809 5.0kb upstream 5.0kb upstream 5000 false Chr04: 1241553-1246552 Phaseolus vulgaris
Phvul.004G009809 5.0kb downstream 5.0kb downstream 9020 true Chr04: 1232533-1241552 Phaseolus vulgaris
Phvul.004G009809 5.0kb downstream 5.0kb downstream 5000 false Chr04: 1232533-1237532 Phaseolus vulgaris
Phvul.004G009809 10.0kb upstream 10.0kb upstream 14020 true Chr04: 1237533-1251552 Phaseolus vulgaris
Phvul.004G009809 10.0kb upstream 10.0kb upstream 10000 false Chr04: 1241553-1251552 Phaseolus vulgaris
Phvul.004G009809 10.0kb downstream 10.0kb downstream 14020 true Chr04: 1227533-1241552 Phaseolus vulgaris
Phvul.004G009809 10.0kb downstream 10.0kb downstream 10000 false Chr04: 1227533-1237532 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306111 5265 Fabidae View MSA
124074430 5270 Rosid View MSA
123753756 5271 Pentapetalae View MSA
122797794 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.52147 0.0 4.81796   Low
cufflinks 2.86254 0.0 8.45473    
cufflinks 2.77816 0.0 8.17136    
cufflinks 2.47271 0.0 7.54144    
cufflinks 2.72085 0.0 8.14535    
cufflinks 2.21403 0.0 6.72505    
cufflinks 1.4144 0.0 4.5423   Low
cufflinks 1.87671 0.0 5.80069    
cufflinks 1.48114 0.0 4.75443   Low
cufflinks 4.07487 0.0 11.5947   High
cufflinks 1.6947 0.0 5.35495    

0 Strain