Gene : Phvul.007G090500 P. vulgaris v2.1
Defline:  (1 of 4) KOG2462 - C2H2-type Zn-finger protein Genomic Order:  915
Name:  ? Phvul.007G090500 Secondary Identifier:  ? PAC:37165301
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.007G090500 0.5kb upstream 0.5kb upstream 3622 true Chr07: 9334425-9338046 Phaseolus vulgaris
Phvul.007G090500 0.5kb upstream 0.5kb upstream 500 false Chr07: 9334425-9334924 Phaseolus vulgaris
Phvul.007G090500 0.5kb downstream 0.5kb downstream 3622 true Chr07: 9334925-9338546 Phaseolus vulgaris
Phvul.007G090500 0.5kb downstream 0.5kb downstream 500 false Chr07: 9338047-9338546 Phaseolus vulgaris
Phvul.007G090500 1.0kb upstream 1.0kb upstream 4122 true Chr07: 9333925-9338046 Phaseolus vulgaris
Phvul.007G090500 1.0kb upstream 1.0kb upstream 1000 false Chr07: 9333925-9334924 Phaseolus vulgaris
Phvul.007G090500 1.0kb downstream 1.0kb downstream 4122 true Chr07: 9334925-9339046 Phaseolus vulgaris
Phvul.007G090500 1.0kb downstream 1.0kb downstream 1000 false Chr07: 9338047-9339046 Phaseolus vulgaris
Phvul.007G090500 2.0kb upstream 2.0kb upstream 5122 true Chr07: 9332925-9338046 Phaseolus vulgaris
Phvul.007G090500 2.0kb upstream 2.0kb upstream 2000 false Chr07: 9332925-9334924 Phaseolus vulgaris
Phvul.007G090500 2.0kb downstream 2.0kb downstream 5122 true Chr07: 9334925-9340046 Phaseolus vulgaris
Phvul.007G090500 2.0kb downstream 2.0kb downstream 2000 false Chr07: 9338047-9340046 Phaseolus vulgaris
Phvul.007G090500 5.0kb upstream 5.0kb upstream 8122 true Chr07: 9329925-9338046 Phaseolus vulgaris
Phvul.007G090500 5.0kb upstream 5.0kb upstream 5000 false Chr07: 9329925-9334924 Phaseolus vulgaris
Phvul.007G090500 5.0kb downstream 5.0kb downstream 8122 true Chr07: 9334925-9343046 Phaseolus vulgaris
Phvul.007G090500 5.0kb downstream 5.0kb downstream 5000 false Chr07: 9338047-9343046 Phaseolus vulgaris
Phvul.007G090500 10.0kb upstream 10.0kb upstream 13122 true Chr07: 9324925-9338046 Phaseolus vulgaris
Phvul.007G090500 10.0kb upstream 10.0kb upstream 10000 false Chr07: 9324925-9334924 Phaseolus vulgaris
Phvul.007G090500 10.0kb downstream 10.0kb downstream 13122 true Chr07: 9334925-9348046 Phaseolus vulgaris
Phvul.007G090500 10.0kb downstream 10.0kb downstream 10000 false Chr07: 9338047-9348046 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309425 5265 Fabidae View MSA
124065989 5270 Rosid View MSA
123750703 5271 Pentapetalae View MSA
122786021 5272 Eudicot View MSA
122049146 5273 Angiosperm View MSA
121347779 5274 Embryophyte View MSA
123380625 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.74845 0.0 33.8392    
cufflinks 3.85357 0.0 14.0699   Low
cufflinks 6.14479 0.0 19.9459    
cufflinks 2.70149 0.0 8.8114   Low
cufflinks 3.74527 0.0 13.8418   Low
cufflinks 7.02825 0.0 26.0037    
cufflinks 19.5005 0.0 54.4827   High
cufflinks 9.77431 0.0 33.9026    
cufflinks 15.7238 0.0 44.7649   High
cufflinks 7.65731 0.0 28.0893    
cufflinks 8.66745 0.0 27.0963    

0 Strain