Gene : Phvul.004G144500 P. vulgaris v2.1
Defline:  (1 of 2) PTHR11999:SF113 - GLUTAMATE DECARBOXYLASE 2 Genomic Order:  1472
Name:  ? Phvul.004G144500 Secondary Identifier:  ? PAC:37163230
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY0-1305 Phaseolus vulgaris pathologic  
Pvulgaris PWY-4321 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.004G144500 0.5kb upstream 0.5kb upstream 4598 true Chr04: 44574076-44578673 Phaseolus vulgaris
Phvul.004G144500 0.5kb upstream 0.5kb upstream 500 false Chr04: 44574076-44574575 Phaseolus vulgaris
Phvul.004G144500 0.5kb downstream 0.5kb downstream 4598 true Chr04: 44574576-44579173 Phaseolus vulgaris
Phvul.004G144500 0.5kb downstream 0.5kb downstream 500 false Chr04: 44578674-44579173 Phaseolus vulgaris
Phvul.004G144500 1.0kb upstream 1.0kb upstream 5098 true Chr04: 44573576-44578673 Phaseolus vulgaris
Phvul.004G144500 1.0kb upstream 1.0kb upstream 1000 false Chr04: 44573576-44574575 Phaseolus vulgaris
Phvul.004G144500 1.0kb downstream 1.0kb downstream 5098 true Chr04: 44574576-44579673 Phaseolus vulgaris
Phvul.004G144500 1.0kb downstream 1.0kb downstream 1000 false Chr04: 44578674-44579673 Phaseolus vulgaris
Phvul.004G144500 2.0kb upstream 2.0kb upstream 6098 true Chr04: 44572576-44578673 Phaseolus vulgaris
Phvul.004G144500 2.0kb upstream 2.0kb upstream 2000 false Chr04: 44572576-44574575 Phaseolus vulgaris
Phvul.004G144500 2.0kb downstream 2.0kb downstream 6098 true Chr04: 44574576-44580673 Phaseolus vulgaris
Phvul.004G144500 2.0kb downstream 2.0kb downstream 2000 false Chr04: 44578674-44580673 Phaseolus vulgaris
Phvul.004G144500 5.0kb upstream 5.0kb upstream 9098 true Chr04: 44569576-44578673 Phaseolus vulgaris
Phvul.004G144500 5.0kb upstream 5.0kb upstream 5000 false Chr04: 44569576-44574575 Phaseolus vulgaris
Phvul.004G144500 5.0kb downstream 5.0kb downstream 9098 true Chr04: 44574576-44583673 Phaseolus vulgaris
Phvul.004G144500 5.0kb downstream 5.0kb downstream 5000 false Chr04: 44578674-44583673 Phaseolus vulgaris
Phvul.004G144500 10.0kb upstream 10.0kb upstream 14098 true Chr04: 44564576-44578673 Phaseolus vulgaris
Phvul.004G144500 10.0kb upstream 10.0kb upstream 10000 false Chr04: 44564576-44574575 Phaseolus vulgaris
Phvul.004G144500 10.0kb downstream 10.0kb downstream 14098 true Chr04: 44574576-44588673 Phaseolus vulgaris
Phvul.004G144500 10.0kb downstream 10.0kb downstream 10000 false Chr04: 44578674-44588673 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304634 5265 Fabidae View MSA
124069705 5270 Rosid View MSA
123740239 5271 Pentapetalae View MSA
122794594 5272 Eudicot View MSA
122050334 5273 Angiosperm View MSA
121350824 5274 Embryophyte View MSA
123427084 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 68.2245 0.0 187.981 High  
cufflinks 225.684 0.0 741.784 High  
cufflinks 283.006 0.0 981.952 High  
cufflinks 84.701 0.0 236.937 High  
cufflinks 192.992 0.0 608.933 High  
cufflinks 235.252 0.0 780.188 High  
cufflinks 6.44379 0.0 17.6489   Low
cufflinks 1.32177 0.0 4.27348   Low
cufflinks 2.32394 0.0 7.07449   Low
cufflinks 115.61 0.0 338.529 High  
cufflinks 310.259 0.0 1082.95 High  

0 Strain