Gene : Phvul.004G144400 P. vulgaris v2.1
Defline:  (1 of 2) PTHR11999:SF113 - GLUTAMATE DECARBOXYLASE 2 Genomic Order:  1471
Name:  ? Phvul.004G144400 Secondary Identifier:  ? PAC:37162713
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY0-1305 Phaseolus vulgaris pathologic  
Pvulgaris PWY-4321 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.004G144400 0.5kb upstream 0.5kb upstream 4953 true Chr04: 44566679-44571631 Phaseolus vulgaris
Phvul.004G144400 0.5kb upstream 0.5kb upstream 500 false Chr04: 44566679-44567178 Phaseolus vulgaris
Phvul.004G144400 0.5kb downstream 0.5kb downstream 4953 true Chr04: 44567179-44572131 Phaseolus vulgaris
Phvul.004G144400 0.5kb downstream 0.5kb downstream 500 false Chr04: 44571632-44572131 Phaseolus vulgaris
Phvul.004G144400 1.0kb upstream 1.0kb upstream 5453 true Chr04: 44566179-44571631 Phaseolus vulgaris
Phvul.004G144400 1.0kb upstream 1.0kb upstream 1000 false Chr04: 44566179-44567178 Phaseolus vulgaris
Phvul.004G144400 1.0kb downstream 1.0kb downstream 5453 true Chr04: 44567179-44572631 Phaseolus vulgaris
Phvul.004G144400 1.0kb downstream 1.0kb downstream 1000 false Chr04: 44571632-44572631 Phaseolus vulgaris
Phvul.004G144400 2.0kb upstream 2.0kb upstream 6453 true Chr04: 44565179-44571631 Phaseolus vulgaris
Phvul.004G144400 2.0kb upstream 2.0kb upstream 2000 false Chr04: 44565179-44567178 Phaseolus vulgaris
Phvul.004G144400 2.0kb downstream 2.0kb downstream 6453 true Chr04: 44567179-44573631 Phaseolus vulgaris
Phvul.004G144400 2.0kb downstream 2.0kb downstream 2000 false Chr04: 44571632-44573631 Phaseolus vulgaris
Phvul.004G144400 5.0kb upstream 5.0kb upstream 9453 true Chr04: 44562179-44571631 Phaseolus vulgaris
Phvul.004G144400 5.0kb upstream 5.0kb upstream 5000 false Chr04: 44562179-44567178 Phaseolus vulgaris
Phvul.004G144400 5.0kb downstream 5.0kb downstream 9453 true Chr04: 44567179-44576631 Phaseolus vulgaris
Phvul.004G144400 5.0kb downstream 5.0kb downstream 5000 false Chr04: 44571632-44576631 Phaseolus vulgaris
Phvul.004G144400 10.0kb upstream 10.0kb upstream 14453 true Chr04: 44557179-44571631 Phaseolus vulgaris
Phvul.004G144400 10.0kb upstream 10.0kb upstream 10000 false Chr04: 44557179-44567178 Phaseolus vulgaris
Phvul.004G144400 10.0kb downstream 10.0kb downstream 14453 true Chr04: 44567179-44581631 Phaseolus vulgaris
Phvul.004G144400 10.0kb downstream 10.0kb downstream 10000 false Chr04: 44571632-44581631 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304634 5265 Fabidae View MSA
124069705 5270 Rosid View MSA
123740239 5271 Pentapetalae View MSA
122794594 5272 Eudicot View MSA
122050334 5273 Angiosperm View MSA
121350824 5274 Embryophyte View MSA
123427084 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.173234 0.0 0.689651 Low  
cufflinks 0.927787 0.0 3.18552    
cufflinks 0.318102 0.0 1.20388 Low  
cufflinks 0.243152 0.0 0.949663 Low  
cufflinks 1.21125 0.0 4.06674    
cufflinks 2.17405 0.0 6.7763   High
cufflinks 0.0959966 0.0 0.40074 Low  
cufflinks 0.0136798 0.0 0.0692644 Low Low
cufflinks 0.273221 0.0 1.05073 Low  
cufflinks 0.355393 0.0 1.33872    
cufflinks 1.9809 0.0 6.27605   High

0 Strain