Gene : Phvul.007G094200 P. vulgaris v2.1
Defline:  (1 of 1) 4.2.3.5 - Chorismate synthase / 5-enolpyruvylshikimate-3-phosphate phospholyase Genomic Order:  953
Name:  ? Phvul.007G094200 Secondary Identifier:  ? PAC:37165192
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris ARO-PWY Phaseolus vulgaris pathologic  
Pvulgaris PWY-6163 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.007G094200 0.5kb upstream 0.5kb upstream 9340 true Chr07: 9876097-9885436 Phaseolus vulgaris
Phvul.007G094200 0.5kb upstream 0.5kb upstream 500 false Chr07: 9876097-9876596 Phaseolus vulgaris
Phvul.007G094200 0.5kb downstream 0.5kb downstream 9340 true Chr07: 9876597-9885936 Phaseolus vulgaris
Phvul.007G094200 0.5kb downstream 0.5kb downstream 500 false Chr07: 9885437-9885936 Phaseolus vulgaris
Phvul.007G094200 1.0kb upstream 1.0kb upstream 9840 true Chr07: 9875597-9885436 Phaseolus vulgaris
Phvul.007G094200 1.0kb upstream 1.0kb upstream 1000 false Chr07: 9875597-9876596 Phaseolus vulgaris
Phvul.007G094200 1.0kb downstream 1.0kb downstream 9840 true Chr07: 9876597-9886436 Phaseolus vulgaris
Phvul.007G094200 1.0kb downstream 1.0kb downstream 1000 false Chr07: 9885437-9886436 Phaseolus vulgaris
Phvul.007G094200 2.0kb upstream 2.0kb upstream 10840 true Chr07: 9874597-9885436 Phaseolus vulgaris
Phvul.007G094200 2.0kb upstream 2.0kb upstream 2000 false Chr07: 9874597-9876596 Phaseolus vulgaris
Phvul.007G094200 2.0kb downstream 2.0kb downstream 10840 true Chr07: 9876597-9887436 Phaseolus vulgaris
Phvul.007G094200 2.0kb downstream 2.0kb downstream 2000 false Chr07: 9885437-9887436 Phaseolus vulgaris
Phvul.007G094200 5.0kb upstream 5.0kb upstream 13840 true Chr07: 9871597-9885436 Phaseolus vulgaris
Phvul.007G094200 5.0kb upstream 5.0kb upstream 5000 false Chr07: 9871597-9876596 Phaseolus vulgaris
Phvul.007G094200 5.0kb downstream 5.0kb downstream 13840 true Chr07: 9876597-9890436 Phaseolus vulgaris
Phvul.007G094200 5.0kb downstream 5.0kb downstream 5000 false Chr07: 9885437-9890436 Phaseolus vulgaris
Phvul.007G094200 10.0kb upstream 10.0kb upstream 18840 true Chr07: 9866597-9885436 Phaseolus vulgaris
Phvul.007G094200 10.0kb upstream 10.0kb upstream 10000 false Chr07: 9866597-9876596 Phaseolus vulgaris
Phvul.007G094200 10.0kb downstream 10.0kb downstream 18840 true Chr07: 9876597-9895436 Phaseolus vulgaris
Phvul.007G094200 10.0kb downstream 10.0kb downstream 10000 false Chr07: 9885437-9895436 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041230 5273 Angiosperm View MSA
122305453 5265 Fabidae View MSA
124061876 5270 Rosid View MSA
123747909 5271 Pentapetalae View MSA
122787011 5272 Eudicot View MSA
121346403 5274 Embryophyte View MSA
123428194 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 62.9013 0.0 169.106 High High
cufflinks 30.7961 0.0 79.7178   Low
cufflinks 45.411 0.0 119.199 High  
cufflinks 60.0953 0.0 160.244 High  
cufflinks 50.6873 0.0 133.685 High  
cufflinks 36.9844 0.0 96.1567 High  
cufflinks 37.2481 0.0 96.8783 High  
cufflinks 23.49 0.0 60.7331   Low
cufflinks 48.8827 0.0 128.612 High  
cufflinks 43.7463 0.0 114.575 High  
cufflinks 68.2532 0.0 184.054 High High

0 Strain