Gene : Phvul.007G086400 P. vulgaris v2.1
Defline:  (1 of 3) PTHR11709:SF94 - LACCASE-15 Genomic Order:  872
Name:  ? Phvul.007G086400 Secondary Identifier:  ? PAC:37164062
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-5466 Phaseolus vulgaris pathologic  
Pvulgaris PWY-6824 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.007G086400 0.5kb upstream 0.5kb upstream 3539 true Chr07: 8724889-8728427 Phaseolus vulgaris
Phvul.007G086400 0.5kb upstream 0.5kb upstream 500 false Chr07: 8724889-8725388 Phaseolus vulgaris
Phvul.007G086400 0.5kb downstream 0.5kb downstream 3539 true Chr07: 8725389-8728927 Phaseolus vulgaris
Phvul.007G086400 0.5kb downstream 0.5kb downstream 500 false Chr07: 8728428-8728927 Phaseolus vulgaris
Phvul.007G086400 1.0kb upstream 1.0kb upstream 4039 true Chr07: 8724389-8728427 Phaseolus vulgaris
Phvul.007G086400 1.0kb upstream 1.0kb upstream 1000 false Chr07: 8724389-8725388 Phaseolus vulgaris
Phvul.007G086400 1.0kb downstream 1.0kb downstream 4039 true Chr07: 8725389-8729427 Phaseolus vulgaris
Phvul.007G086400 1.0kb downstream 1.0kb downstream 1000 false Chr07: 8728428-8729427 Phaseolus vulgaris
Phvul.007G086400 2.0kb upstream 2.0kb upstream 5039 true Chr07: 8723389-8728427 Phaseolus vulgaris
Phvul.007G086400 2.0kb upstream 2.0kb upstream 2000 false Chr07: 8723389-8725388 Phaseolus vulgaris
Phvul.007G086400 2.0kb downstream 2.0kb downstream 5039 true Chr07: 8725389-8730427 Phaseolus vulgaris
Phvul.007G086400 2.0kb downstream 2.0kb downstream 2000 false Chr07: 8728428-8730427 Phaseolus vulgaris
Phvul.007G086400 5.0kb upstream 5.0kb upstream 8039 true Chr07: 8720389-8728427 Phaseolus vulgaris
Phvul.007G086400 5.0kb upstream 5.0kb upstream 5000 false Chr07: 8720389-8725388 Phaseolus vulgaris
Phvul.007G086400 5.0kb downstream 5.0kb downstream 8039 true Chr07: 8725389-8733427 Phaseolus vulgaris
Phvul.007G086400 5.0kb downstream 5.0kb downstream 5000 false Chr07: 8728428-8733427 Phaseolus vulgaris
Phvul.007G086400 10.0kb upstream 10.0kb upstream 13039 true Chr07: 8715389-8728427 Phaseolus vulgaris
Phvul.007G086400 10.0kb upstream 10.0kb upstream 10000 false Chr07: 8715389-8725388 Phaseolus vulgaris
Phvul.007G086400 10.0kb downstream 10.0kb downstream 13039 true Chr07: 8725389-8738427 Phaseolus vulgaris
Phvul.007G086400 10.0kb downstream 10.0kb downstream 10000 false Chr07: 8728428-8738427 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314424 5265 Fabidae View MSA
124074925 5270 Rosid View MSA
123753088 5271 Pentapetalae View MSA
122795935 5272 Eudicot View MSA
122050716 5273 Angiosperm View MSA
121350155 5274 Embryophyte View MSA
123428014 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.32046 0.0 20.0517    
cufflinks 0.451269 0.0 1.66379 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 2.63795 0.0 8.05629    
cufflinks 1.45067 0.0 4.75893    
cufflinks 40.871 0.0 107.181 High High
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0206978 0.0 0.100532 Low Low
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 13.4088 0.0 35.3111    

0 Strain