Gene : Phvul.004G139600 P. vulgaris v2.1
Defline:  (1 of 4) PTHR22763:SF5 - E3 UBIQUITIN-PROTEIN LIGASE CIP8 Genomic Order:  1423
Name:  ? Phvul.004G139600 Secondary Identifier:  ? PAC:37162165
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-7511 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.004G139600 0.5kb upstream 0.5kb upstream 2081 true Chr04: 43942766-43944846 Phaseolus vulgaris
Phvul.004G139600 0.5kb upstream 0.5kb upstream 500 false Chr04: 43944347-43944846 Phaseolus vulgaris
Phvul.004G139600 0.5kb downstream 0.5kb downstream 2081 true Chr04: 43942266-43944346 Phaseolus vulgaris
Phvul.004G139600 0.5kb downstream 0.5kb downstream 500 false Chr04: 43942266-43942765 Phaseolus vulgaris
Phvul.004G139600 1.0kb upstream 1.0kb upstream 2581 true Chr04: 43942766-43945346 Phaseolus vulgaris
Phvul.004G139600 1.0kb upstream 1.0kb upstream 1000 false Chr04: 43944347-43945346 Phaseolus vulgaris
Phvul.004G139600 1.0kb downstream 1.0kb downstream 2581 true Chr04: 43941766-43944346 Phaseolus vulgaris
Phvul.004G139600 1.0kb downstream 1.0kb downstream 1000 false Chr04: 43941766-43942765 Phaseolus vulgaris
Phvul.004G139600 2.0kb upstream 2.0kb upstream 3581 true Chr04: 43942766-43946346 Phaseolus vulgaris
Phvul.004G139600 2.0kb upstream 2.0kb upstream 2000 false Chr04: 43944347-43946346 Phaseolus vulgaris
Phvul.004G139600 2.0kb downstream 2.0kb downstream 3581 true Chr04: 43940766-43944346 Phaseolus vulgaris
Phvul.004G139600 2.0kb downstream 2.0kb downstream 2000 false Chr04: 43940766-43942765 Phaseolus vulgaris
Phvul.004G139600 5.0kb upstream 5.0kb upstream 6581 true Chr04: 43942766-43949346 Phaseolus vulgaris
Phvul.004G139600 5.0kb upstream 5.0kb upstream 5000 false Chr04: 43944347-43949346 Phaseolus vulgaris
Phvul.004G139600 5.0kb downstream 5.0kb downstream 6581 true Chr04: 43937766-43944346 Phaseolus vulgaris
Phvul.004G139600 5.0kb downstream 5.0kb downstream 5000 false Chr04: 43937766-43942765 Phaseolus vulgaris
Phvul.004G139600 10.0kb upstream 10.0kb upstream 11581 true Chr04: 43942766-43954346 Phaseolus vulgaris
Phvul.004G139600 10.0kb upstream 10.0kb upstream 10000 false Chr04: 43944347-43954346 Phaseolus vulgaris
Phvul.004G139600 10.0kb downstream 10.0kb downstream 11581 true Chr04: 43932766-43944346 Phaseolus vulgaris
Phvul.004G139600 10.0kb downstream 10.0kb downstream 10000 false Chr04: 43932766-43942765 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299997 5265 Fabidae View MSA
124062824 5270 Rosid View MSA
123753393 5271 Pentapetalae View MSA
122788391 5272 Eudicot View MSA
122050385 5273 Angiosperm View MSA
123429130 5275 Viridiplantae View MSA
121349521 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 28.8815 0.0 74.7485    
cufflinks 19.7043 0.0 51.0946    
cufflinks 16.3909 0.0 42.8834   Low
cufflinks 33.9171 0.0 88.123   High
cufflinks 25.1726 0.0 65.0705    
cufflinks 15.6025 0.0 40.8031   Low
cufflinks 18.4888 0.0 47.9083    
cufflinks 16.2064 0.0 42.238   Low
cufflinks 22.5449 0.0 58.2881    
cufflinks 25.4084 0.0 65.6765    
cufflinks 33.5527 0.0 87.1461   High

0 Strain