Gene : Phvul.007G088400 P. vulgaris v2.1

Defline:  (1 of 1) 2.7.7.72 - CCA tRNA nucleotidyltransferase / tRNA-nucleotidyltransferase Genomic Order:  894
Name:  ? Phvul.007G088400 Secondary Identifier:  ? PAC:37165081

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.007G088400 0.5kb upstream 0.5kb upstream 9558 true Chr07: 9075480-9085037 Phaseolus vulgaris
Phvul.007G088400 0.5kb upstream 0.5kb upstream 500 false Chr07: 9075480-9075979 Phaseolus vulgaris
Phvul.007G088400 0.5kb downstream 0.5kb downstream 9558 true Chr07: 9075980-9085537 Phaseolus vulgaris
Phvul.007G088400 0.5kb downstream 0.5kb downstream 500 false Chr07: 9085038-9085537 Phaseolus vulgaris
Phvul.007G088400 1.0kb upstream 1.0kb upstream 10058 true Chr07: 9074980-9085037 Phaseolus vulgaris
Phvul.007G088400 1.0kb upstream 1.0kb upstream 1000 false Chr07: 9074980-9075979 Phaseolus vulgaris
Phvul.007G088400 1.0kb downstream 1.0kb downstream 10058 true Chr07: 9075980-9086037 Phaseolus vulgaris
Phvul.007G088400 1.0kb downstream 1.0kb downstream 1000 false Chr07: 9085038-9086037 Phaseolus vulgaris
Phvul.007G088400 2.0kb upstream 2.0kb upstream 11058 true Chr07: 9073980-9085037 Phaseolus vulgaris
Phvul.007G088400 2.0kb upstream 2.0kb upstream 2000 false Chr07: 9073980-9075979 Phaseolus vulgaris
Phvul.007G088400 2.0kb downstream 2.0kb downstream 11058 true Chr07: 9075980-9087037 Phaseolus vulgaris
Phvul.007G088400 2.0kb downstream 2.0kb downstream 2000 false Chr07: 9085038-9087037 Phaseolus vulgaris
Phvul.007G088400 5.0kb upstream 5.0kb upstream 14058 true Chr07: 9070980-9085037 Phaseolus vulgaris
Phvul.007G088400 5.0kb upstream 5.0kb upstream 5000 false Chr07: 9070980-9075979 Phaseolus vulgaris
Phvul.007G088400 5.0kb downstream 5.0kb downstream 14058 true Chr07: 9075980-9090037 Phaseolus vulgaris
Phvul.007G088400 5.0kb downstream 5.0kb downstream 5000 false Chr07: 9085038-9090037 Phaseolus vulgaris
Phvul.007G088400 10.0kb upstream 10.0kb upstream 19058 true Chr07: 9065980-9085037 Phaseolus vulgaris
Phvul.007G088400 10.0kb upstream 10.0kb upstream 10000 false Chr07: 9065980-9075979 Phaseolus vulgaris
Phvul.007G088400 10.0kb downstream 10.0kb downstream 19058 true Chr07: 9075980-9095037 Phaseolus vulgaris
Phvul.007G088400 10.0kb downstream 10.0kb downstream 10000 false Chr07: 9085038-9095037 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303528 5265 Fabidae View MSA
124064235 5270 Rosid View MSA
123751527 5271 Pentapetalae View MSA
122793185 5272 Eudicot View MSA
122043482 5273 Angiosperm View MSA
121344625 5274 Embryophyte View MSA
123428724 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.83634 0.0 16.3109    
cufflinks 5.59826 0.0 17.9979    
cufflinks 4.465 0.0 18.2172    
cufflinks 4.67543 0.0 18.7451    
cufflinks 4.34411 0.0 17.8435    
cufflinks 5.535 0.0 24.0713    
cufflinks 6.42771 0.0 23.8579    
cufflinks 8.15243 0.0 28.8005   High
cufflinks 6.2157 0.0 27.091    
cufflinks 4.73437 0.0 23.6277    
cufflinks 3.23915 0.0 11.7521   Low

0 Strain