Gene : Phvul.004G127000 P. vulgaris v2.1
Defline:  (1 of 2) PTHR11638//PTHR11638:SF105 - ATP-DEPENDENT CLP PROTEASE // SUBFAMILY NOT NAMED Genomic Order:  1295
Name:  ? Phvul.004G127000 Secondary Identifier:  ? PAC:37162912
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.004G127000 0.5kb upstream 0.5kb upstream 5232 true Chr04: 42305839-42311070 Phaseolus vulgaris
Phvul.004G127000 0.5kb upstream 0.5kb upstream 500 false Chr04: 42310571-42311070 Phaseolus vulgaris
Phvul.004G127000 0.5kb downstream 0.5kb downstream 5232 true Chr04: 42305339-42310570 Phaseolus vulgaris
Phvul.004G127000 0.5kb downstream 0.5kb downstream 500 false Chr04: 42305339-42305838 Phaseolus vulgaris
Phvul.004G127000 1.0kb upstream 1.0kb upstream 5732 true Chr04: 42305839-42311570 Phaseolus vulgaris
Phvul.004G127000 1.0kb upstream 1.0kb upstream 1000 false Chr04: 42310571-42311570 Phaseolus vulgaris
Phvul.004G127000 1.0kb downstream 1.0kb downstream 5732 true Chr04: 42304839-42310570 Phaseolus vulgaris
Phvul.004G127000 1.0kb downstream 1.0kb downstream 1000 false Chr04: 42304839-42305838 Phaseolus vulgaris
Phvul.004G127000 2.0kb upstream 2.0kb upstream 6732 true Chr04: 42305839-42312570 Phaseolus vulgaris
Phvul.004G127000 2.0kb upstream 2.0kb upstream 2000 false Chr04: 42310571-42312570 Phaseolus vulgaris
Phvul.004G127000 2.0kb downstream 2.0kb downstream 6732 true Chr04: 42303839-42310570 Phaseolus vulgaris
Phvul.004G127000 2.0kb downstream 2.0kb downstream 2000 false Chr04: 42303839-42305838 Phaseolus vulgaris
Phvul.004G127000 5.0kb upstream 5.0kb upstream 9732 true Chr04: 42305839-42315570 Phaseolus vulgaris
Phvul.004G127000 5.0kb upstream 5.0kb upstream 5000 false Chr04: 42310571-42315570 Phaseolus vulgaris
Phvul.004G127000 5.0kb downstream 5.0kb downstream 9732 true Chr04: 42300839-42310570 Phaseolus vulgaris
Phvul.004G127000 5.0kb downstream 5.0kb downstream 5000 false Chr04: 42300839-42305838 Phaseolus vulgaris
Phvul.004G127000 10.0kb upstream 10.0kb upstream 14732 true Chr04: 42305839-42320570 Phaseolus vulgaris
Phvul.004G127000 10.0kb upstream 10.0kb upstream 10000 false Chr04: 42310571-42320570 Phaseolus vulgaris
Phvul.004G127000 10.0kb downstream 10.0kb downstream 14732 true Chr04: 42295839-42310570 Phaseolus vulgaris
Phvul.004G127000 10.0kb downstream 10.0kb downstream 10000 false Chr04: 42295839-42305838 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313551 5265 Fabidae View MSA
124064515 5270 Rosid View MSA
123741380 5271 Pentapetalae View MSA
122789129 5272 Eudicot View MSA
122047723 5273 Angiosperm View MSA
121348075 5274 Embryophyte View MSA
123425862 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 22.9289 0.0 60.6058    
cufflinks 27.1594 0.0 71.3363    
cufflinks 77.6642 0.0 202.886 High High
cufflinks 43.3066 0.0 112.036 High High
cufflinks 20.2664 0.0 54.3139    
cufflinks 37.6934 0.0 97.6964 High  
cufflinks 8.00676 0.0 23.3355   Low
cufflinks 14.8132 0.0 40.6382    
cufflinks 12.0481 0.0 33.751    
cufflinks 15.2441 0.0 41.7856    
cufflinks 19.2237 0.0 51.7949    

0 Strain