Gene : Phvul.004G128300 P. vulgaris v2.1
Defline:  (1 of 1) PTHR34201:SF1 - GLYCINE-RICH PROTEIN Genomic Order:  1307
Name:  ? Phvul.004G128300 Secondary Identifier:  ? PAC:37161774
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.004G128300 0.5kb upstream 0.5kb upstream 4400 true Chr04: 42453381-42457780 Phaseolus vulgaris
Phvul.004G128300 0.5kb upstream 0.5kb upstream 500 false Chr04: 42457281-42457780 Phaseolus vulgaris
Phvul.004G128300 0.5kb downstream 0.5kb downstream 4400 true Chr04: 42452881-42457280 Phaseolus vulgaris
Phvul.004G128300 0.5kb downstream 0.5kb downstream 500 false Chr04: 42452881-42453380 Phaseolus vulgaris
Phvul.004G128300 1.0kb upstream 1.0kb upstream 4900 true Chr04: 42453381-42458280 Phaseolus vulgaris
Phvul.004G128300 1.0kb upstream 1.0kb upstream 1000 false Chr04: 42457281-42458280 Phaseolus vulgaris
Phvul.004G128300 1.0kb downstream 1.0kb downstream 4900 true Chr04: 42452381-42457280 Phaseolus vulgaris
Phvul.004G128300 1.0kb downstream 1.0kb downstream 1000 false Chr04: 42452381-42453380 Phaseolus vulgaris
Phvul.004G128300 2.0kb upstream 2.0kb upstream 5900 true Chr04: 42453381-42459280 Phaseolus vulgaris
Phvul.004G128300 2.0kb upstream 2.0kb upstream 2000 false Chr04: 42457281-42459280 Phaseolus vulgaris
Phvul.004G128300 2.0kb downstream 2.0kb downstream 5900 true Chr04: 42451381-42457280 Phaseolus vulgaris
Phvul.004G128300 2.0kb downstream 2.0kb downstream 2000 false Chr04: 42451381-42453380 Phaseolus vulgaris
Phvul.004G128300 5.0kb upstream 5.0kb upstream 8900 true Chr04: 42453381-42462280 Phaseolus vulgaris
Phvul.004G128300 5.0kb upstream 5.0kb upstream 5000 false Chr04: 42457281-42462280 Phaseolus vulgaris
Phvul.004G128300 5.0kb downstream 5.0kb downstream 8900 true Chr04: 42448381-42457280 Phaseolus vulgaris
Phvul.004G128300 5.0kb downstream 5.0kb downstream 5000 false Chr04: 42448381-42453380 Phaseolus vulgaris
Phvul.004G128300 10.0kb upstream 10.0kb upstream 13900 true Chr04: 42453381-42467280 Phaseolus vulgaris
Phvul.004G128300 10.0kb upstream 10.0kb upstream 10000 false Chr04: 42457281-42467280 Phaseolus vulgaris
Phvul.004G128300 10.0kb downstream 10.0kb downstream 13900 true Chr04: 42443381-42457280 Phaseolus vulgaris
Phvul.004G128300 10.0kb downstream 10.0kb downstream 10000 false Chr04: 42443381-42453380 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040910 5273 Angiosperm View MSA
122308767 5265 Fabidae View MSA
124061673 5270 Rosid View MSA
123738758 5271 Pentapetalae View MSA
122791938 5272 Eudicot View MSA
121344292 5274 Embryophyte View MSA
123380018 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 28.0011 0.0 73.5524   High
cufflinks 12.7621 0.0 35.7689    
cufflinks 22.1395 0.0 59.3327   High
cufflinks 29.0167 0.0 76.6014   High
cufflinks 12.1233 0.0 34.4546    
cufflinks 10.3357 0.0 29.5894    
cufflinks 8.51693 0.0 24.9462    
cufflinks 8.01398 0.0 23.4326    
cufflinks 6.80337 0.0 20.4983   Low
cufflinks 10.0589 0.0 28.8465    
cufflinks 15.1547 0.0 42.0041    

0 Strain