Gene : Phvul.007G080700 P. vulgaris v2.1
Defline:  (1 of 1) PTHR21290//PTHR21290:SF32 - SPHINGOMYELIN SYNTHETASE // SUBFAMILY NOT NAMED Genomic Order:  815
Name:  ? Phvul.007G080700 Secondary Identifier:  ? PAC:37165183
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.007G080700 0.5kb upstream 0.5kb upstream 3541 true Chr07: 7906512-7910052 Phaseolus vulgaris
Phvul.007G080700 0.5kb upstream 0.5kb upstream 500 false Chr07: 7909553-7910052 Phaseolus vulgaris
Phvul.007G080700 0.5kb downstream 0.5kb downstream 3541 true Chr07: 7906012-7909552 Phaseolus vulgaris
Phvul.007G080700 0.5kb downstream 0.5kb downstream 500 false Chr07: 7906012-7906511 Phaseolus vulgaris
Phvul.007G080700 1.0kb upstream 1.0kb upstream 4041 true Chr07: 7906512-7910552 Phaseolus vulgaris
Phvul.007G080700 1.0kb upstream 1.0kb upstream 1000 false Chr07: 7909553-7910552 Phaseolus vulgaris
Phvul.007G080700 1.0kb downstream 1.0kb downstream 4041 true Chr07: 7905512-7909552 Phaseolus vulgaris
Phvul.007G080700 1.0kb downstream 1.0kb downstream 1000 false Chr07: 7905512-7906511 Phaseolus vulgaris
Phvul.007G080700 2.0kb upstream 2.0kb upstream 5041 true Chr07: 7906512-7911552 Phaseolus vulgaris
Phvul.007G080700 2.0kb upstream 2.0kb upstream 2000 false Chr07: 7909553-7911552 Phaseolus vulgaris
Phvul.007G080700 2.0kb downstream 2.0kb downstream 5041 true Chr07: 7904512-7909552 Phaseolus vulgaris
Phvul.007G080700 2.0kb downstream 2.0kb downstream 2000 false Chr07: 7904512-7906511 Phaseolus vulgaris
Phvul.007G080700 5.0kb upstream 5.0kb upstream 8041 true Chr07: 7906512-7914552 Phaseolus vulgaris
Phvul.007G080700 5.0kb upstream 5.0kb upstream 5000 false Chr07: 7909553-7914552 Phaseolus vulgaris
Phvul.007G080700 5.0kb downstream 5.0kb downstream 8041 true Chr07: 7901512-7909552 Phaseolus vulgaris
Phvul.007G080700 5.0kb downstream 5.0kb downstream 5000 false Chr07: 7901512-7906511 Phaseolus vulgaris
Phvul.007G080700 10.0kb upstream 10.0kb upstream 13041 true Chr07: 7906512-7919552 Phaseolus vulgaris
Phvul.007G080700 10.0kb upstream 10.0kb upstream 10000 false Chr07: 7909553-7919552 Phaseolus vulgaris
Phvul.007G080700 10.0kb downstream 10.0kb downstream 13041 true Chr07: 7896512-7909552 Phaseolus vulgaris
Phvul.007G080700 10.0kb downstream 10.0kb downstream 10000 false Chr07: 7896512-7906511 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041514 5273 Angiosperm View MSA
122305234 5265 Fabidae View MSA
124064312 5270 Rosid View MSA
123737084 5271 Pentapetalae View MSA
122786755 5272 Eudicot View MSA
121345949 5274 Embryophyte View MSA
123427335 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.7157 0.0 41.0984   Low
cufflinks 32.2876 0.0 83.6017    
cufflinks 42.2182 0.0 110.243 High  
cufflinks 46.2482 0.0 121.357 High High
cufflinks 37.1542 0.0 96.5868 High  
cufflinks 32.4036 0.0 83.898    
cufflinks 24.0887 0.0 62.2889    
cufflinks 19.492 0.0 50.584    
cufflinks 39.1546 0.0 101.797 High  
cufflinks 9.86474 0.0 26.5865   Low
cufflinks 37.9572 0.0 98.7136 High  

0 Strain