Gene : Phvul.007G079900 P. vulgaris v2.1
Defline:  (1 of 2) PTHR16517:SF31 - TUBBY-LIKE F-BOX PROTEIN 1-RELATED Genomic Order:  807
Name:  ? Phvul.007G079900 Secondary Identifier:  ? PAC:37166982
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.007G079900 0.5kb upstream 0.5kb upstream 4302 true Chr07: 7833629-7837930 Phaseolus vulgaris
Phvul.007G079900 0.5kb upstream 0.5kb upstream 500 false Chr07: 7833629-7834128 Phaseolus vulgaris
Phvul.007G079900 0.5kb downstream 0.5kb downstream 4302 true Chr07: 7834129-7838430 Phaseolus vulgaris
Phvul.007G079900 0.5kb downstream 0.5kb downstream 500 false Chr07: 7837931-7838430 Phaseolus vulgaris
Phvul.007G079900 1.0kb upstream 1.0kb upstream 4802 true Chr07: 7833129-7837930 Phaseolus vulgaris
Phvul.007G079900 1.0kb upstream 1.0kb upstream 1000 false Chr07: 7833129-7834128 Phaseolus vulgaris
Phvul.007G079900 1.0kb downstream 1.0kb downstream 4802 true Chr07: 7834129-7838930 Phaseolus vulgaris
Phvul.007G079900 1.0kb downstream 1.0kb downstream 1000 false Chr07: 7837931-7838930 Phaseolus vulgaris
Phvul.007G079900 2.0kb upstream 2.0kb upstream 5802 true Chr07: 7832129-7837930 Phaseolus vulgaris
Phvul.007G079900 2.0kb upstream 2.0kb upstream 2000 false Chr07: 7832129-7834128 Phaseolus vulgaris
Phvul.007G079900 2.0kb downstream 2.0kb downstream 5802 true Chr07: 7834129-7839930 Phaseolus vulgaris
Phvul.007G079900 2.0kb downstream 2.0kb downstream 2000 false Chr07: 7837931-7839930 Phaseolus vulgaris
Phvul.007G079900 5.0kb upstream 5.0kb upstream 8802 true Chr07: 7829129-7837930 Phaseolus vulgaris
Phvul.007G079900 5.0kb upstream 5.0kb upstream 5000 false Chr07: 7829129-7834128 Phaseolus vulgaris
Phvul.007G079900 5.0kb downstream 5.0kb downstream 8802 true Chr07: 7834129-7842930 Phaseolus vulgaris
Phvul.007G079900 5.0kb downstream 5.0kb downstream 5000 false Chr07: 7837931-7842930 Phaseolus vulgaris
Phvul.007G079900 10.0kb upstream 10.0kb upstream 13802 true Chr07: 7824129-7837930 Phaseolus vulgaris
Phvul.007G079900 10.0kb upstream 10.0kb upstream 10000 false Chr07: 7824129-7834128 Phaseolus vulgaris
Phvul.007G079900 10.0kb downstream 10.0kb downstream 13802 true Chr07: 7834129-7847930 Phaseolus vulgaris
Phvul.007G079900 10.0kb downstream 10.0kb downstream 10000 false Chr07: 7837931-7847930 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310791 5265 Fabidae View MSA
124068448 5270 Rosid View MSA
123743171 5271 Pentapetalae View MSA
122786446 5272 Eudicot View MSA
122044327 5273 Angiosperm View MSA
123429062 5275 Viridiplantae View MSA
121348967 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 20.7186 0.0 53.6841   High
cufflinks 10.1485 0.0 27.3104    
cufflinks 8.21758 0.0 22.4347   Low
cufflinks 10.1294 0.0 27.3288    
cufflinks 12.8188 0.0 33.9574    
cufflinks 7.11619 0.0 19.7108   Low
cufflinks 22.0732 0.0 57.0891   High
cufflinks 11.0402 0.0 29.3834    
cufflinks 26.3259 0.0 68.0515   High
cufflinks 16.7053 0.0 43.5975    
cufflinks 10.9141 0.0 29.2479    

0 Strain