Gene : Phvul.004G116400 P. vulgaris v2.1
Defline:  (1 of 3) PTHR22814//PTHR22814:SF52 - COPPER TRANSPORT PROTEIN ATOX1-RELATED // SUBFAMILY NOT NAMED Genomic Order:  1187
Name:  ? Phvul.004G116400 Secondary Identifier:  ? PAC:37162442
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.004G116400 0.5kb upstream 0.5kb upstream 2190 true Chr04: 40024192-40026381 Phaseolus vulgaris
Phvul.004G116400 0.5kb upstream 0.5kb upstream 500 false Chr04: 40024192-40024691 Phaseolus vulgaris
Phvul.004G116400 0.5kb downstream 0.5kb downstream 2190 true Chr04: 40024692-40026881 Phaseolus vulgaris
Phvul.004G116400 0.5kb downstream 0.5kb downstream 500 false Chr04: 40026382-40026881 Phaseolus vulgaris
Phvul.004G116400 1.0kb upstream 1.0kb upstream 2690 true Chr04: 40023692-40026381 Phaseolus vulgaris
Phvul.004G116400 1.0kb upstream 1.0kb upstream 1000 false Chr04: 40023692-40024691 Phaseolus vulgaris
Phvul.004G116400 1.0kb downstream 1.0kb downstream 2690 true Chr04: 40024692-40027381 Phaseolus vulgaris
Phvul.004G116400 1.0kb downstream 1.0kb downstream 1000 false Chr04: 40026382-40027381 Phaseolus vulgaris
Phvul.004G116400 2.0kb upstream 2.0kb upstream 3690 true Chr04: 40022692-40026381 Phaseolus vulgaris
Phvul.004G116400 2.0kb upstream 2.0kb upstream 2000 false Chr04: 40022692-40024691 Phaseolus vulgaris
Phvul.004G116400 2.0kb downstream 2.0kb downstream 3690 true Chr04: 40024692-40028381 Phaseolus vulgaris
Phvul.004G116400 2.0kb downstream 2.0kb downstream 2000 false Chr04: 40026382-40028381 Phaseolus vulgaris
Phvul.004G116400 5.0kb upstream 5.0kb upstream 6690 true Chr04: 40019692-40026381 Phaseolus vulgaris
Phvul.004G116400 5.0kb upstream 5.0kb upstream 5000 false Chr04: 40019692-40024691 Phaseolus vulgaris
Phvul.004G116400 5.0kb downstream 5.0kb downstream 6690 true Chr04: 40024692-40031381 Phaseolus vulgaris
Phvul.004G116400 5.0kb downstream 5.0kb downstream 5000 false Chr04: 40026382-40031381 Phaseolus vulgaris
Phvul.004G116400 10.0kb upstream 10.0kb upstream 11690 true Chr04: 40014692-40026381 Phaseolus vulgaris
Phvul.004G116400 10.0kb upstream 10.0kb upstream 10000 false Chr04: 40014692-40024691 Phaseolus vulgaris
Phvul.004G116400 10.0kb downstream 10.0kb downstream 11690 true Chr04: 40024692-40036381 Phaseolus vulgaris
Phvul.004G116400 10.0kb downstream 10.0kb downstream 10000 false Chr04: 40026382-40036381 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303927 5265 Fabidae View MSA
124061014 5270 Rosid View MSA
123749167 5271 Pentapetalae View MSA
122790653 5272 Eudicot View MSA
122051560 5273 Angiosperm View MSA
121351529 5274 Embryophyte View MSA
123424750 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.3892 0.0 79.4111    
cufflinks 21.6811 0.0 91.1064   High
cufflinks 4.16607 0.0 22.0071   Low
cufflinks 7.32813 0.0 45.0224    
cufflinks 10.3183 0.0 51.9849    
cufflinks 4.15606 0.0 24.5431   Low
cufflinks 8.0366 0.0 40.6748    
cufflinks 15.5927 0.0 57.642    
cufflinks 8.18472 0.0 44.0845    
cufflinks 34.2625 0.0 137.671   High
cufflinks 15.1748 0.0 66.2909    

0 Strain