Gene : Phvul.007G066540 P. vulgaris v2.1
Defline:  (1 of 1) PTHR21530:SF1 - TRAB FAMILY PROTEIN Genomic Order:  669
Name:  ? Phvul.007G066540 Secondary Identifier:  ? PAC:37166108
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.007G066540 0.5kb upstream 0.5kb upstream 5177 true Chr07: 6053596-6058772 Phaseolus vulgaris
Phvul.007G066540 0.5kb upstream 0.5kb upstream 500 false Chr07: 6053596-6054095 Phaseolus vulgaris
Phvul.007G066540 0.5kb downstream 0.5kb downstream 5177 true Chr07: 6054096-6059272 Phaseolus vulgaris
Phvul.007G066540 0.5kb downstream 0.5kb downstream 500 false Chr07: 6058773-6059272 Phaseolus vulgaris
Phvul.007G066540 1.0kb upstream 1.0kb upstream 5677 true Chr07: 6053096-6058772 Phaseolus vulgaris
Phvul.007G066540 1.0kb upstream 1.0kb upstream 1000 false Chr07: 6053096-6054095 Phaseolus vulgaris
Phvul.007G066540 1.0kb downstream 1.0kb downstream 5677 true Chr07: 6054096-6059772 Phaseolus vulgaris
Phvul.007G066540 1.0kb downstream 1.0kb downstream 1000 false Chr07: 6058773-6059772 Phaseolus vulgaris
Phvul.007G066540 2.0kb upstream 2.0kb upstream 6677 true Chr07: 6052096-6058772 Phaseolus vulgaris
Phvul.007G066540 2.0kb upstream 2.0kb upstream 2000 false Chr07: 6052096-6054095 Phaseolus vulgaris
Phvul.007G066540 2.0kb downstream 2.0kb downstream 6677 true Chr07: 6054096-6060772 Phaseolus vulgaris
Phvul.007G066540 2.0kb downstream 2.0kb downstream 2000 false Chr07: 6058773-6060772 Phaseolus vulgaris
Phvul.007G066540 5.0kb upstream 5.0kb upstream 9677 true Chr07: 6049096-6058772 Phaseolus vulgaris
Phvul.007G066540 5.0kb upstream 5.0kb upstream 5000 false Chr07: 6049096-6054095 Phaseolus vulgaris
Phvul.007G066540 5.0kb downstream 5.0kb downstream 9677 true Chr07: 6054096-6063772 Phaseolus vulgaris
Phvul.007G066540 5.0kb downstream 5.0kb downstream 5000 false Chr07: 6058773-6063772 Phaseolus vulgaris
Phvul.007G066540 10.0kb upstream 10.0kb upstream 14677 true Chr07: 6044096-6058772 Phaseolus vulgaris
Phvul.007G066540 10.0kb upstream 10.0kb upstream 10000 false Chr07: 6044096-6054095 Phaseolus vulgaris
Phvul.007G066540 10.0kb downstream 10.0kb downstream 14677 true Chr07: 6054096-6068772 Phaseolus vulgaris
Phvul.007G066540 10.0kb downstream 10.0kb downstream 10000 false Chr07: 6058773-6068772 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309535 5265 Fabidae View MSA
124061808 5270 Rosid View MSA
123740348 5271 Pentapetalae View MSA
122790474 5272 Eudicot View MSA
122042461 5273 Angiosperm View MSA
121350143 5274 Embryophyte View MSA
123427103 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.4112 0.0 19.1385    
cufflinks 1.48485 0.0 9.22303    
cufflinks 35.8841 0.0 117.2   High
cufflinks 1.46615 0.0 5.83776    
cufflinks 3.15432 0.0 15.9671    
cufflinks 11.4804 0.0 41.7597    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0181729 0.0 0.118768 Low Low
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 4.54666 0.0 19.8605    
cufflinks 1.48482 0.0 9.12412    

0 Strain