Gene : Phvul.004G117100 P. vulgaris v2.1
Defline:  (1 of 1) KOG0108//KOG4744 - mRNA cleavage and polyadenylation factor I complex, subunit RNA15 // Uncharacterized conserved protein Genomic Order:  1194
Name:  ? Phvul.004G117100 Secondary Identifier:  ? PAC:37162822
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.004G117100 0.5kb upstream 0.5kb upstream 5415 true Chr04: 40175088-40180502 Phaseolus vulgaris
Phvul.004G117100 0.5kb upstream 0.5kb upstream 500 false Chr04: 40175088-40175587 Phaseolus vulgaris
Phvul.004G117100 0.5kb downstream 0.5kb downstream 5415 true Chr04: 40175588-40181002 Phaseolus vulgaris
Phvul.004G117100 0.5kb downstream 0.5kb downstream 500 false Chr04: 40180503-40181002 Phaseolus vulgaris
Phvul.004G117100 1.0kb upstream 1.0kb upstream 5915 true Chr04: 40174588-40180502 Phaseolus vulgaris
Phvul.004G117100 1.0kb upstream 1.0kb upstream 1000 false Chr04: 40174588-40175587 Phaseolus vulgaris
Phvul.004G117100 1.0kb downstream 1.0kb downstream 5915 true Chr04: 40175588-40181502 Phaseolus vulgaris
Phvul.004G117100 1.0kb downstream 1.0kb downstream 1000 false Chr04: 40180503-40181502 Phaseolus vulgaris
Phvul.004G117100 2.0kb upstream 2.0kb upstream 6915 true Chr04: 40173588-40180502 Phaseolus vulgaris
Phvul.004G117100 2.0kb upstream 2.0kb upstream 2000 false Chr04: 40173588-40175587 Phaseolus vulgaris
Phvul.004G117100 2.0kb downstream 2.0kb downstream 6915 true Chr04: 40175588-40182502 Phaseolus vulgaris
Phvul.004G117100 2.0kb downstream 2.0kb downstream 2000 false Chr04: 40180503-40182502 Phaseolus vulgaris
Phvul.004G117100 5.0kb upstream 5.0kb upstream 9915 true Chr04: 40170588-40180502 Phaseolus vulgaris
Phvul.004G117100 5.0kb upstream 5.0kb upstream 5000 false Chr04: 40170588-40175587 Phaseolus vulgaris
Phvul.004G117100 5.0kb downstream 5.0kb downstream 9915 true Chr04: 40175588-40185502 Phaseolus vulgaris
Phvul.004G117100 5.0kb downstream 5.0kb downstream 5000 false Chr04: 40180503-40185502 Phaseolus vulgaris
Phvul.004G117100 10.0kb upstream 10.0kb upstream 14915 true Chr04: 40165588-40180502 Phaseolus vulgaris
Phvul.004G117100 10.0kb upstream 10.0kb upstream 10000 false Chr04: 40165588-40175587 Phaseolus vulgaris
Phvul.004G117100 10.0kb downstream 10.0kb downstream 14915 true Chr04: 40175588-40190502 Phaseolus vulgaris
Phvul.004G117100 10.0kb downstream 10.0kb downstream 10000 false Chr04: 40180503-40190502 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313287 5265 Fabidae View MSA
124069753 5270 Rosid View MSA
123745202 5271 Pentapetalae View MSA
122785813 5272 Eudicot View MSA
122050504 5273 Angiosperm View MSA
121311951 5274 Embryophyte View MSA
123349176 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.394444 0.0 1.36326 Low High
cufflinks 0.882373 0.0 2.77528   High
cufflinks 0.0505022 0.0 0.20698 Low  
cufflinks 0.0965468 0.0 0.377076 Low  
cufflinks 0.188224 0.0 0.701285 Low  
cufflinks 0.0095788 0.0 0.0461843 Low Low
cufflinks 0.0735837 0.0 0.292922 Low  
cufflinks 0.0238248 0.0 0.104321 Low Low
cufflinks 0.127896 0.0 0.486298 Low  
cufflinks 0.0316462 0.0 0.135616 Low  
cufflinks 0.13294 0.0 0.508188 Low  

0 Strain