Gene : Phvul.004G123200 P. vulgaris v2.1
Defline:  (1 of 2) PTHR21726:SF51 - GENOMIC DNA, CHROMOSOME 5, P1 CLONE:MTG10 Genomic Order:  1259
Name:  ? Phvul.004G123200 Secondary Identifier:  ? PAC:37163831
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.004G123200 0.5kb upstream 0.5kb upstream 3853 true Chr04: 41597514-41601366 Phaseolus vulgaris
Phvul.004G123200 0.5kb upstream 0.5kb upstream 500 false Chr04: 41597514-41598013 Phaseolus vulgaris
Phvul.004G123200 0.5kb downstream 0.5kb downstream 3853 true Chr04: 41598014-41601866 Phaseolus vulgaris
Phvul.004G123200 0.5kb downstream 0.5kb downstream 500 false Chr04: 41601367-41601866 Phaseolus vulgaris
Phvul.004G123200 1.0kb upstream 1.0kb upstream 4353 true Chr04: 41597014-41601366 Phaseolus vulgaris
Phvul.004G123200 1.0kb upstream 1.0kb upstream 1000 false Chr04: 41597014-41598013 Phaseolus vulgaris
Phvul.004G123200 1.0kb downstream 1.0kb downstream 4353 true Chr04: 41598014-41602366 Phaseolus vulgaris
Phvul.004G123200 1.0kb downstream 1.0kb downstream 1000 false Chr04: 41601367-41602366 Phaseolus vulgaris
Phvul.004G123200 2.0kb upstream 2.0kb upstream 5353 true Chr04: 41596014-41601366 Phaseolus vulgaris
Phvul.004G123200 2.0kb upstream 2.0kb upstream 2000 false Chr04: 41596014-41598013 Phaseolus vulgaris
Phvul.004G123200 2.0kb downstream 2.0kb downstream 5353 true Chr04: 41598014-41603366 Phaseolus vulgaris
Phvul.004G123200 2.0kb downstream 2.0kb downstream 2000 false Chr04: 41601367-41603366 Phaseolus vulgaris
Phvul.004G123200 5.0kb upstream 5.0kb upstream 8353 true Chr04: 41593014-41601366 Phaseolus vulgaris
Phvul.004G123200 5.0kb upstream 5.0kb upstream 5000 false Chr04: 41593014-41598013 Phaseolus vulgaris
Phvul.004G123200 5.0kb downstream 5.0kb downstream 8353 true Chr04: 41598014-41606366 Phaseolus vulgaris
Phvul.004G123200 5.0kb downstream 5.0kb downstream 5000 false Chr04: 41601367-41606366 Phaseolus vulgaris
Phvul.004G123200 10.0kb upstream 10.0kb upstream 13353 true Chr04: 41588014-41601366 Phaseolus vulgaris
Phvul.004G123200 10.0kb upstream 10.0kb upstream 10000 false Chr04: 41588014-41598013 Phaseolus vulgaris
Phvul.004G123200 10.0kb downstream 10.0kb downstream 13353 true Chr04: 41598014-41611366 Phaseolus vulgaris
Phvul.004G123200 10.0kb downstream 10.0kb downstream 10000 false Chr04: 41601367-41611366 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314975 5265 Fabidae View MSA
124062054 5270 Rosid View MSA
123749389 5271 Pentapetalae View MSA
122793525 5272 Eudicot View MSA
122045763 5273 Angiosperm View MSA
121310498 5274 Embryophyte View MSA
123347966 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.42384 0.0 4.49363    
cufflinks 14.1516 0.0 36.6278   High
cufflinks 7.07409 0.0 18.8816    
cufflinks 1.255 0.0 3.99981   Low
cufflinks 6.05271 0.0 16.4525    
cufflinks 7.36435 0.0 19.625    
cufflinks 1.61505 0.0 4.96457    
cufflinks 0.840385 0.0 2.79028   Low
cufflinks 3.54615 0.0 9.98659    
cufflinks 33.6069 0.0 88.5501   High
cufflinks 4.78223 0.0 13.2487    

0 Strain