Gene : Phvul.004G107900 P. vulgaris v2.1
Defline:  (1 of 2) 2.3.2.5 - Glutaminyl-peptide cyclotransferase / Glutaminyl-tRNA cyclotransferase Genomic Order:  1106
Name:  ? Phvul.004G107900 Secondary Identifier:  ? PAC:37162872
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.004G107900 0.5kb upstream 0.5kb upstream 11472 true Chr04: 37577191-37588662 Phaseolus vulgaris
Phvul.004G107900 0.5kb upstream 0.5kb upstream 500 false Chr04: 37577191-37577690 Phaseolus vulgaris
Phvul.004G107900 0.5kb downstream 0.5kb downstream 11472 true Chr04: 37577691-37589162 Phaseolus vulgaris
Phvul.004G107900 0.5kb downstream 0.5kb downstream 500 false Chr04: 37588663-37589162 Phaseolus vulgaris
Phvul.004G107900 1.0kb upstream 1.0kb upstream 11972 true Chr04: 37576691-37588662 Phaseolus vulgaris
Phvul.004G107900 1.0kb upstream 1.0kb upstream 1000 false Chr04: 37576691-37577690 Phaseolus vulgaris
Phvul.004G107900 1.0kb downstream 1.0kb downstream 11972 true Chr04: 37577691-37589662 Phaseolus vulgaris
Phvul.004G107900 1.0kb downstream 1.0kb downstream 1000 false Chr04: 37588663-37589662 Phaseolus vulgaris
Phvul.004G107900 2.0kb upstream 2.0kb upstream 12972 true Chr04: 37575691-37588662 Phaseolus vulgaris
Phvul.004G107900 2.0kb upstream 2.0kb upstream 2000 false Chr04: 37575691-37577690 Phaseolus vulgaris
Phvul.004G107900 2.0kb downstream 2.0kb downstream 12972 true Chr04: 37577691-37590662 Phaseolus vulgaris
Phvul.004G107900 2.0kb downstream 2.0kb downstream 2000 false Chr04: 37588663-37590662 Phaseolus vulgaris
Phvul.004G107900 5.0kb upstream 5.0kb upstream 15972 true Chr04: 37572691-37588662 Phaseolus vulgaris
Phvul.004G107900 5.0kb upstream 5.0kb upstream 5000 false Chr04: 37572691-37577690 Phaseolus vulgaris
Phvul.004G107900 5.0kb downstream 5.0kb downstream 15972 true Chr04: 37577691-37593662 Phaseolus vulgaris
Phvul.004G107900 5.0kb downstream 5.0kb downstream 5000 false Chr04: 37588663-37593662 Phaseolus vulgaris
Phvul.004G107900 10.0kb upstream 10.0kb upstream 20972 true Chr04: 37567691-37588662 Phaseolus vulgaris
Phvul.004G107900 10.0kb upstream 10.0kb upstream 10000 false Chr04: 37567691-37577690 Phaseolus vulgaris
Phvul.004G107900 10.0kb downstream 10.0kb downstream 20972 true Chr04: 37577691-37598662 Phaseolus vulgaris
Phvul.004G107900 10.0kb downstream 10.0kb downstream 10000 false Chr04: 37588663-37598662 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300209 5265 Fabidae View MSA
124065871 5270 Rosid View MSA
123747738 5271 Pentapetalae View MSA
122791260 5272 Eudicot View MSA
122047891 5273 Angiosperm View MSA
121348416 5274 Embryophyte View MSA
123426276 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.3392 0.0 35.997    
cufflinks 13.7513 0.0 37.1113    
cufflinks 14.0953 0.0 37.9236    
cufflinks 23.1445 0.0 60.4859   High
cufflinks 15.4665 0.0 41.5068    
cufflinks 10.7408 0.0 29.6127   Low
cufflinks 14.2031 0.0 38.2437    
cufflinks 16.664 0.0 44.2255    
cufflinks 21.5723 0.0 56.6031   High
cufflinks 13.596 0.0 36.6896    
cufflinks 14.9596 0.0 40.2005    

0 Strain