Gene : Phvul.004G108300 P. vulgaris v2.1
Defline:  (1 of 1) K16900 - two pore calcium channel protein, plant (TPC1, CCH1) Genomic Order:  1110
Name:  ? Phvul.004G108300 Secondary Identifier:  ? PAC:37162997
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.004G108300 0.5kb upstream 0.5kb upstream 29716 true Chr04: 37655239-37684954 Phaseolus vulgaris
Phvul.004G108300 0.5kb upstream 0.5kb upstream 500 false Chr04: 37684455-37684954 Phaseolus vulgaris
Phvul.004G108300 0.5kb downstream 0.5kb downstream 29716 true Chr04: 37654739-37684454 Phaseolus vulgaris
Phvul.004G108300 0.5kb downstream 0.5kb downstream 500 false Chr04: 37654739-37655238 Phaseolus vulgaris
Phvul.004G108300 1.0kb upstream 1.0kb upstream 30216 true Chr04: 37655239-37685454 Phaseolus vulgaris
Phvul.004G108300 1.0kb upstream 1.0kb upstream 1000 false Chr04: 37684455-37685454 Phaseolus vulgaris
Phvul.004G108300 1.0kb downstream 1.0kb downstream 30216 true Chr04: 37654239-37684454 Phaseolus vulgaris
Phvul.004G108300 1.0kb downstream 1.0kb downstream 1000 false Chr04: 37654239-37655238 Phaseolus vulgaris
Phvul.004G108300 2.0kb upstream 2.0kb upstream 31216 true Chr04: 37655239-37686454 Phaseolus vulgaris
Phvul.004G108300 2.0kb upstream 2.0kb upstream 2000 false Chr04: 37684455-37686454 Phaseolus vulgaris
Phvul.004G108300 2.0kb downstream 2.0kb downstream 31216 true Chr04: 37653239-37684454 Phaseolus vulgaris
Phvul.004G108300 2.0kb downstream 2.0kb downstream 2000 false Chr04: 37653239-37655238 Phaseolus vulgaris
Phvul.004G108300 5.0kb upstream 5.0kb upstream 34216 true Chr04: 37655239-37689454 Phaseolus vulgaris
Phvul.004G108300 5.0kb upstream 5.0kb upstream 5000 false Chr04: 37684455-37689454 Phaseolus vulgaris
Phvul.004G108300 5.0kb downstream 5.0kb downstream 34216 true Chr04: 37650239-37684454 Phaseolus vulgaris
Phvul.004G108300 5.0kb downstream 5.0kb downstream 5000 false Chr04: 37650239-37655238 Phaseolus vulgaris
Phvul.004G108300 10.0kb upstream 10.0kb upstream 39216 true Chr04: 37655239-37694454 Phaseolus vulgaris
Phvul.004G108300 10.0kb upstream 10.0kb upstream 10000 false Chr04: 37684455-37694454 Phaseolus vulgaris
Phvul.004G108300 10.0kb downstream 10.0kb downstream 39216 true Chr04: 37645239-37684454 Phaseolus vulgaris
Phvul.004G108300 10.0kb downstream 10.0kb downstream 10000 false Chr04: 37645239-37655238 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299491 5265 Fabidae View MSA
124050278 5270 Rosid View MSA
123736366 5271 Pentapetalae View MSA
122789852 5272 Eudicot View MSA
122042673 5273 Angiosperm View MSA
121347876 5274 Embryophyte View MSA
123380661 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.40644 0.0 32.399    
cufflinks 9.13244 0.0 31.8675    
cufflinks 23.0918 0.0 79.5362   High
cufflinks 13.3303 0.0 44.0394    
cufflinks 15.5614 0.0 50.3862    
cufflinks 21.57 0.0 74.5892   High
cufflinks 9.73527 0.0 29.3176    
cufflinks 8.77445 0.0 29.7654    
cufflinks 18.2475 0.0 56.2462    
cufflinks 7.96833 0.0 26.9991   Low
cufflinks 11.2329 0.0 38.09    

0 Strain