Gene : Phvul.007G055400 P. vulgaris v2.1
Defline:  (1 of 1) PTHR34798:SF2 - PROTEIN TIME FOR COFFEE Genomic Order:  553
Name:  ? Phvul.007G055400 Secondary Identifier:  ? PAC:37164945
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.007G055400 0.5kb upstream 0.5kb upstream 7752 true Chr07: 4591580-4599331 Phaseolus vulgaris
Phvul.007G055400 0.5kb upstream 0.5kb upstream 500 false Chr07: 4591580-4592079 Phaseolus vulgaris
Phvul.007G055400 0.5kb downstream 0.5kb downstream 7752 true Chr07: 4592080-4599831 Phaseolus vulgaris
Phvul.007G055400 0.5kb downstream 0.5kb downstream 500 false Chr07: 4599332-4599831 Phaseolus vulgaris
Phvul.007G055400 1.0kb upstream 1.0kb upstream 8252 true Chr07: 4591080-4599331 Phaseolus vulgaris
Phvul.007G055400 1.0kb upstream 1.0kb upstream 1000 false Chr07: 4591080-4592079 Phaseolus vulgaris
Phvul.007G055400 1.0kb downstream 1.0kb downstream 8252 true Chr07: 4592080-4600331 Phaseolus vulgaris
Phvul.007G055400 1.0kb downstream 1.0kb downstream 1000 false Chr07: 4599332-4600331 Phaseolus vulgaris
Phvul.007G055400 2.0kb upstream 2.0kb upstream 9252 true Chr07: 4590080-4599331 Phaseolus vulgaris
Phvul.007G055400 2.0kb upstream 2.0kb upstream 2000 false Chr07: 4590080-4592079 Phaseolus vulgaris
Phvul.007G055400 2.0kb downstream 2.0kb downstream 9252 true Chr07: 4592080-4601331 Phaseolus vulgaris
Phvul.007G055400 2.0kb downstream 2.0kb downstream 2000 false Chr07: 4599332-4601331 Phaseolus vulgaris
Phvul.007G055400 5.0kb upstream 5.0kb upstream 12252 true Chr07: 4587080-4599331 Phaseolus vulgaris
Phvul.007G055400 5.0kb upstream 5.0kb upstream 5000 false Chr07: 4587080-4592079 Phaseolus vulgaris
Phvul.007G055400 5.0kb downstream 5.0kb downstream 12252 true Chr07: 4592080-4604331 Phaseolus vulgaris
Phvul.007G055400 5.0kb downstream 5.0kb downstream 5000 false Chr07: 4599332-4604331 Phaseolus vulgaris
Phvul.007G055400 10.0kb upstream 10.0kb upstream 17252 true Chr07: 4582080-4599331 Phaseolus vulgaris
Phvul.007G055400 10.0kb upstream 10.0kb upstream 10000 false Chr07: 4582080-4592079 Phaseolus vulgaris
Phvul.007G055400 10.0kb downstream 10.0kb downstream 17252 true Chr07: 4592080-4609331 Phaseolus vulgaris
Phvul.007G055400 10.0kb downstream 10.0kb downstream 10000 false Chr07: 4599332-4609331 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299656 5265 Fabidae View MSA
124068885 5270 Rosid View MSA
123740436 5271 Pentapetalae View MSA
122788537 5272 Eudicot View MSA
122049796 5273 Angiosperm View MSA
121350697 5274 Embryophyte View MSA
123381850 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.18956 0.0 24.0102   Low
cufflinks 31.3678 0.0 92.1003    
cufflinks 48.8124 0.0 152.936 High  
cufflinks 9.0781 0.0 23.6887   Low
cufflinks 48.6532 0.0 152.185 High  
cufflinks 55.3247 0.0 178.153 High  
cufflinks 42.8386 0.0 133.641 High  
cufflinks 37.4105 0.0 113.658 High  
cufflinks 37.6691 0.0 114.915 High  
cufflinks 59.8865 0.0 195.043 High  
cufflinks 32.4327 0.0 95.7304    

0 Strain