Gene : Phvul.007G053400 P. vulgaris v2.1
Defline:  (1 of 3) K14400 - pre-mRNA cleavage complex 2 protein Pcf11 (PCF11) Genomic Order:  533
Name:  ? Phvul.007G053400 Secondary Identifier:  ? PAC:37164587
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.007G053400 0.5kb upstream 0.5kb upstream 7137 true Chr07: 4378644-4385780 Phaseolus vulgaris
Phvul.007G053400 0.5kb upstream 0.5kb upstream 500 false Chr07: 4385281-4385780 Phaseolus vulgaris
Phvul.007G053400 0.5kb downstream 0.5kb downstream 7137 true Chr07: 4378144-4385280 Phaseolus vulgaris
Phvul.007G053400 0.5kb downstream 0.5kb downstream 500 false Chr07: 4378144-4378643 Phaseolus vulgaris
Phvul.007G053400 1.0kb upstream 1.0kb upstream 7637 true Chr07: 4378644-4386280 Phaseolus vulgaris
Phvul.007G053400 1.0kb upstream 1.0kb upstream 1000 false Chr07: 4385281-4386280 Phaseolus vulgaris
Phvul.007G053400 1.0kb downstream 1.0kb downstream 7637 true Chr07: 4377644-4385280 Phaseolus vulgaris
Phvul.007G053400 1.0kb downstream 1.0kb downstream 1000 false Chr07: 4377644-4378643 Phaseolus vulgaris
Phvul.007G053400 2.0kb upstream 2.0kb upstream 8637 true Chr07: 4378644-4387280 Phaseolus vulgaris
Phvul.007G053400 2.0kb upstream 2.0kb upstream 2000 false Chr07: 4385281-4387280 Phaseolus vulgaris
Phvul.007G053400 2.0kb downstream 2.0kb downstream 8637 true Chr07: 4376644-4385280 Phaseolus vulgaris
Phvul.007G053400 2.0kb downstream 2.0kb downstream 2000 false Chr07: 4376644-4378643 Phaseolus vulgaris
Phvul.007G053400 5.0kb upstream 5.0kb upstream 11637 true Chr07: 4378644-4390280 Phaseolus vulgaris
Phvul.007G053400 5.0kb upstream 5.0kb upstream 5000 false Chr07: 4385281-4390280 Phaseolus vulgaris
Phvul.007G053400 5.0kb downstream 5.0kb downstream 11637 true Chr07: 4373644-4385280 Phaseolus vulgaris
Phvul.007G053400 5.0kb downstream 5.0kb downstream 5000 false Chr07: 4373644-4378643 Phaseolus vulgaris
Phvul.007G053400 10.0kb upstream 10.0kb upstream 16637 true Chr07: 4378644-4395280 Phaseolus vulgaris
Phvul.007G053400 10.0kb upstream 10.0kb upstream 10000 false Chr07: 4385281-4395280 Phaseolus vulgaris
Phvul.007G053400 10.0kb downstream 10.0kb downstream 16637 true Chr07: 4368644-4385280 Phaseolus vulgaris
Phvul.007G053400 10.0kb downstream 10.0kb downstream 10000 false Chr07: 4368644-4378643 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307813 5265 Fabidae View MSA
124072237 5270 Rosid View MSA
123741427 5271 Pentapetalae View MSA
122796233 5272 Eudicot View MSA
122048698 5273 Angiosperm View MSA
121349751 5274 Embryophyte View MSA
123426332 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.16009 0.0 23.3007   Low
cufflinks 10.9867 0.0 39.1147   High
cufflinks 8.35101 0.0 30.6531    
cufflinks 6.51046 0.0 22.0105   Low
cufflinks 9.11512 0.0 32.8771    
cufflinks 10.5668 0.0 34.1027    
cufflinks 8.35004 0.0 30.4007    
cufflinks 9.72191 0.0 34.7886    
cufflinks 9.19692 0.0 33.042    
cufflinks 11.9966 0.0 42.6426   High
cufflinks 9.14956 0.0 33.0377    

0 Strain