Gene : Phvul.004G107001 P. vulgaris v2.1
Defline:  (1 of 9) PTHR22814:SF129 - COPPER TRANSPORT FAMILY PROTEIN-RELATED Genomic Order:  1090
Name:  ? Phvul.004G107001 Secondary Identifier:  ? PAC:37162640
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.004G107001 0.5kb upstream 0.5kb upstream 1445 true Chr04: 35346629-35348073 Phaseolus vulgaris
Phvul.004G107001 0.5kb upstream 0.5kb upstream 500 false Chr04: 35347574-35348073 Phaseolus vulgaris
Phvul.004G107001 0.5kb downstream 0.5kb downstream 1445 true Chr04: 35346129-35347573 Phaseolus vulgaris
Phvul.004G107001 0.5kb downstream 0.5kb downstream 500 false Chr04: 35346129-35346628 Phaseolus vulgaris
Phvul.004G107001 1.0kb upstream 1.0kb upstream 1945 true Chr04: 35346629-35348573 Phaseolus vulgaris
Phvul.004G107001 1.0kb upstream 1.0kb upstream 1000 false Chr04: 35347574-35348573 Phaseolus vulgaris
Phvul.004G107001 1.0kb downstream 1.0kb downstream 1945 true Chr04: 35345629-35347573 Phaseolus vulgaris
Phvul.004G107001 1.0kb downstream 1.0kb downstream 1000 false Chr04: 35345629-35346628 Phaseolus vulgaris
Phvul.004G107001 2.0kb upstream 2.0kb upstream 2945 true Chr04: 35346629-35349573 Phaseolus vulgaris
Phvul.004G107001 2.0kb upstream 2.0kb upstream 2000 false Chr04: 35347574-35349573 Phaseolus vulgaris
Phvul.004G107001 2.0kb downstream 2.0kb downstream 2945 true Chr04: 35344629-35347573 Phaseolus vulgaris
Phvul.004G107001 2.0kb downstream 2.0kb downstream 2000 false Chr04: 35344629-35346628 Phaseolus vulgaris
Phvul.004G107001 5.0kb upstream 5.0kb upstream 5945 true Chr04: 35346629-35352573 Phaseolus vulgaris
Phvul.004G107001 5.0kb upstream 5.0kb upstream 5000 false Chr04: 35347574-35352573 Phaseolus vulgaris
Phvul.004G107001 5.0kb downstream 5.0kb downstream 5945 true Chr04: 35341629-35347573 Phaseolus vulgaris
Phvul.004G107001 5.0kb downstream 5.0kb downstream 5000 false Chr04: 35341629-35346628 Phaseolus vulgaris
Phvul.004G107001 10.0kb upstream 10.0kb upstream 10945 true Chr04: 35346629-35357573 Phaseolus vulgaris
Phvul.004G107001 10.0kb upstream 10.0kb upstream 10000 false Chr04: 35347574-35357573 Phaseolus vulgaris
Phvul.004G107001 10.0kb downstream 10.0kb downstream 10945 true Chr04: 35336629-35347573 Phaseolus vulgaris
Phvul.004G107001 10.0kb downstream 10.0kb downstream 10000 false Chr04: 35336629-35346628 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122298597 5265 Fabidae View MSA
124072200 5270 Rosid View MSA
123751300 5271 Pentapetalae View MSA
122793053 5272 Eudicot View MSA
122051560 5273 Angiosperm View MSA
121351529 5274 Embryophyte View MSA
123424750 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.5751 0.0 40.155    
cufflinks 4.99169 0.0 16.5256    
cufflinks 1.54453 0.0 5.72998   Low
cufflinks 9.47102 0.0 29.4055    
cufflinks 2.44302 0.0 8.82203    
cufflinks 2.10103 0.0 7.60524    
cufflinks 11.5175 0.0 34.6278    
cufflinks 35.2507 0.0 94.4407 High High
cufflinks 1.13574 0.0 4.34223   Low
cufflinks 19.5729 0.0 55.8058   High
cufflinks 7.63734 0.0 24.2967    

0 Strain