Gene : Phvul.004G109800 P. vulgaris v2.1
Defline:  (1 of 1) PTHR11451//PTHR11451:SF6 - TRNA SYNTHETASE-RELATED // SUBFAMILY NOT NAMED Genomic Order:  1126
Name:  ? Phvul.004G109800 Secondary Identifier:  ? PAC:37162336
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris TRNA-CHARGING-PWY Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.004G109800 0.5kb upstream 0.5kb upstream 6755 true Chr04: 38028842-38035596 Phaseolus vulgaris
Phvul.004G109800 0.5kb upstream 0.5kb upstream 500 false Chr04: 38035097-38035596 Phaseolus vulgaris
Phvul.004G109800 0.5kb downstream 0.5kb downstream 6755 true Chr04: 38028342-38035096 Phaseolus vulgaris
Phvul.004G109800 0.5kb downstream 0.5kb downstream 500 false Chr04: 38028342-38028841 Phaseolus vulgaris
Phvul.004G109800 1.0kb upstream 1.0kb upstream 7255 true Chr04: 38028842-38036096 Phaseolus vulgaris
Phvul.004G109800 1.0kb upstream 1.0kb upstream 1000 false Chr04: 38035097-38036096 Phaseolus vulgaris
Phvul.004G109800 1.0kb downstream 1.0kb downstream 7255 true Chr04: 38027842-38035096 Phaseolus vulgaris
Phvul.004G109800 1.0kb downstream 1.0kb downstream 1000 false Chr04: 38027842-38028841 Phaseolus vulgaris
Phvul.004G109800 2.0kb upstream 2.0kb upstream 8255 true Chr04: 38028842-38037096 Phaseolus vulgaris
Phvul.004G109800 2.0kb upstream 2.0kb upstream 2000 false Chr04: 38035097-38037096 Phaseolus vulgaris
Phvul.004G109800 2.0kb downstream 2.0kb downstream 8255 true Chr04: 38026842-38035096 Phaseolus vulgaris
Phvul.004G109800 2.0kb downstream 2.0kb downstream 2000 false Chr04: 38026842-38028841 Phaseolus vulgaris
Phvul.004G109800 5.0kb upstream 5.0kb upstream 11255 true Chr04: 38028842-38040096 Phaseolus vulgaris
Phvul.004G109800 5.0kb upstream 5.0kb upstream 5000 false Chr04: 38035097-38040096 Phaseolus vulgaris
Phvul.004G109800 5.0kb downstream 5.0kb downstream 11255 true Chr04: 38023842-38035096 Phaseolus vulgaris
Phvul.004G109800 5.0kb downstream 5.0kb downstream 5000 false Chr04: 38023842-38028841 Phaseolus vulgaris
Phvul.004G109800 10.0kb upstream 10.0kb upstream 16255 true Chr04: 38028842-38045096 Phaseolus vulgaris
Phvul.004G109800 10.0kb upstream 10.0kb upstream 10000 false Chr04: 38035097-38045096 Phaseolus vulgaris
Phvul.004G109800 10.0kb downstream 10.0kb downstream 16255 true Chr04: 38018842-38035096 Phaseolus vulgaris
Phvul.004G109800 10.0kb downstream 10.0kb downstream 10000 false Chr04: 38018842-38028841 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308637 5265 Fabidae View MSA
124067863 5270 Rosid View MSA
123737640 5271 Pentapetalae View MSA
122793581 5272 Eudicot View MSA
122044069 5273 Angiosperm View MSA
121345199 5274 Embryophyte View MSA
123428629 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.0204 0.0 36.5297    
cufflinks 11.494 0.0 30.3087    
cufflinks 57.8164 0.0 156.131 High High
cufflinks 14.2245 0.0 37.1558    
cufflinks 10.03 0.0 26.7496    
cufflinks 35.9975 0.0 94.0848 High High
cufflinks 8.31553 0.0 22.4134    
cufflinks 9.79195 0.0 26.0319    
cufflinks 9.24087 0.0 24.7275    
cufflinks 13.9436 0.0 36.4075    
cufflinks 9.74826 0.0 26.0295    

0 Strain