Gene : Phvul.007G056100 P. vulgaris v2.1
Defline:  (1 of 2) PTHR11558//PTHR11558:SF30 - SPERMIDINE/SPERMINE SYNTHASE // SUBFAMILY NOT NAMED Genomic Order:  561
Name:  ? Phvul.007G056100 Secondary Identifier:  ? PAC:37164258
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.007G056100 0.5kb upstream 0.5kb upstream 3558 true Chr07: 4712606-4716163 Phaseolus vulgaris
Phvul.007G056100 0.5kb upstream 0.5kb upstream 500 false Chr07: 4715664-4716163 Phaseolus vulgaris
Phvul.007G056100 0.5kb downstream 0.5kb downstream 3558 true Chr07: 4712106-4715663 Phaseolus vulgaris
Phvul.007G056100 0.5kb downstream 0.5kb downstream 500 false Chr07: 4712106-4712605 Phaseolus vulgaris
Phvul.007G056100 1.0kb upstream 1.0kb upstream 4058 true Chr07: 4712606-4716663 Phaseolus vulgaris
Phvul.007G056100 1.0kb upstream 1.0kb upstream 1000 false Chr07: 4715664-4716663 Phaseolus vulgaris
Phvul.007G056100 1.0kb downstream 1.0kb downstream 4058 true Chr07: 4711606-4715663 Phaseolus vulgaris
Phvul.007G056100 1.0kb downstream 1.0kb downstream 1000 false Chr07: 4711606-4712605 Phaseolus vulgaris
Phvul.007G056100 2.0kb upstream 2.0kb upstream 5058 true Chr07: 4712606-4717663 Phaseolus vulgaris
Phvul.007G056100 2.0kb upstream 2.0kb upstream 2000 false Chr07: 4715664-4717663 Phaseolus vulgaris
Phvul.007G056100 2.0kb downstream 2.0kb downstream 5058 true Chr07: 4710606-4715663 Phaseolus vulgaris
Phvul.007G056100 2.0kb downstream 2.0kb downstream 2000 false Chr07: 4710606-4712605 Phaseolus vulgaris
Phvul.007G056100 5.0kb upstream 5.0kb upstream 8058 true Chr07: 4712606-4720663 Phaseolus vulgaris
Phvul.007G056100 5.0kb upstream 5.0kb upstream 5000 false Chr07: 4715664-4720663 Phaseolus vulgaris
Phvul.007G056100 5.0kb downstream 5.0kb downstream 8058 true Chr07: 4707606-4715663 Phaseolus vulgaris
Phvul.007G056100 5.0kb downstream 5.0kb downstream 5000 false Chr07: 4707606-4712605 Phaseolus vulgaris
Phvul.007G056100 10.0kb upstream 10.0kb upstream 13058 true Chr07: 4712606-4725663 Phaseolus vulgaris
Phvul.007G056100 10.0kb upstream 10.0kb upstream 10000 false Chr07: 4715664-4725663 Phaseolus vulgaris
Phvul.007G056100 10.0kb downstream 10.0kb downstream 13058 true Chr07: 4702606-4715663 Phaseolus vulgaris
Phvul.007G056100 10.0kb downstream 10.0kb downstream 10000 false Chr07: 4702606-4712605 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312400 5265 Fabidae View MSA
124069905 5270 Rosid View MSA
123748388 5271 Pentapetalae View MSA
122794179 5272 Eudicot View MSA
122050339 5273 Angiosperm View MSA
121346949 5274 Embryophyte View MSA
123426712 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.1053 0.0 35.1479    
cufflinks 17.3822 0.0 45.7571    
cufflinks 16.3066 0.0 43.014    
cufflinks 18.4771 0.0 48.6925    
cufflinks 34.0417 0.0 87.9976 High  
cufflinks 41.1542 0.0 106.662 High  
cufflinks 21.4949 0.0 55.9823    
cufflinks 9.21608 0.0 25.4028    
cufflinks 32.8739 0.0 84.9729 High  
cufflinks 2.13552 0.0 6.94101   Low
cufflinks 47.1853 0.0 122.483 High High

0 Strain