Gene : Phvul.004G113700 P. vulgaris v2.1
Defline:  (1 of 2) PTHR10869:SF55 - OXOGLUTARATE/IRON-DEPENDENT OXYGENASE Genomic Order:  1162
Name:  ? Phvul.004G113700 Secondary Identifier:  ? PAC:37162733
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.004G113700 0.5kb upstream 0.5kb upstream 4176 true Chr04: 39330364-39334539 Phaseolus vulgaris
Phvul.004G113700 0.5kb upstream 0.5kb upstream 500 false Chr04: 39334040-39334539 Phaseolus vulgaris
Phvul.004G113700 0.5kb downstream 0.5kb downstream 4176 true Chr04: 39329864-39334039 Phaseolus vulgaris
Phvul.004G113700 0.5kb downstream 0.5kb downstream 500 false Chr04: 39329864-39330363 Phaseolus vulgaris
Phvul.004G113700 1.0kb upstream 1.0kb upstream 4676 true Chr04: 39330364-39335039 Phaseolus vulgaris
Phvul.004G113700 1.0kb upstream 1.0kb upstream 1000 false Chr04: 39334040-39335039 Phaseolus vulgaris
Phvul.004G113700 1.0kb downstream 1.0kb downstream 4676 true Chr04: 39329364-39334039 Phaseolus vulgaris
Phvul.004G113700 1.0kb downstream 1.0kb downstream 1000 false Chr04: 39329364-39330363 Phaseolus vulgaris
Phvul.004G113700 2.0kb upstream 2.0kb upstream 5676 true Chr04: 39330364-39336039 Phaseolus vulgaris
Phvul.004G113700 2.0kb upstream 2.0kb upstream 2000 false Chr04: 39334040-39336039 Phaseolus vulgaris
Phvul.004G113700 2.0kb downstream 2.0kb downstream 5676 true Chr04: 39328364-39334039 Phaseolus vulgaris
Phvul.004G113700 2.0kb downstream 2.0kb downstream 2000 false Chr04: 39328364-39330363 Phaseolus vulgaris
Phvul.004G113700 5.0kb upstream 5.0kb upstream 8676 true Chr04: 39330364-39339039 Phaseolus vulgaris
Phvul.004G113700 5.0kb upstream 5.0kb upstream 5000 false Chr04: 39334040-39339039 Phaseolus vulgaris
Phvul.004G113700 5.0kb downstream 5.0kb downstream 8676 true Chr04: 39325364-39334039 Phaseolus vulgaris
Phvul.004G113700 5.0kb downstream 5.0kb downstream 5000 false Chr04: 39325364-39330363 Phaseolus vulgaris
Phvul.004G113700 10.0kb upstream 10.0kb upstream 13676 true Chr04: 39330364-39344039 Phaseolus vulgaris
Phvul.004G113700 10.0kb upstream 10.0kb upstream 10000 false Chr04: 39334040-39344039 Phaseolus vulgaris
Phvul.004G113700 10.0kb downstream 10.0kb downstream 13676 true Chr04: 39320364-39334039 Phaseolus vulgaris
Phvul.004G113700 10.0kb downstream 10.0kb downstream 10000 false Chr04: 39320364-39330363 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121791816 5273 Angiosperm View MSA
122300160 5265 Fabidae View MSA
124066883 5270 Rosid View MSA
123739634 5271 Pentapetalae View MSA
122794132 5272 Eudicot View MSA
121063105 5274 Embryophyte View MSA
123102888 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.6856 0.0 19.0488   High
cufflinks 1.97003 0.0 7.7686   Low
cufflinks 3.11237 0.0 13.7368    
cufflinks 4.21522 0.0 17.6166   High
cufflinks 2.68927 0.0 9.86144    
cufflinks 2.45833 0.0 11.6016    
cufflinks 2.54613 0.0 9.13387    
cufflinks 2.6615 0.0 12.2492    
cufflinks 2.84645 0.0 12.9881    
cufflinks 4.01746 0.0 16.8383   High
cufflinks 3.48429 0.0 15.5092    

0 Strain