Gene : Phvul.004G095600 P. vulgaris v2.1
Defline:  (1 of 1) K10844 - DNA excision repair protein ERCC-2 (ERCC2, XPD) Genomic Order:  839
Name:  ? Phvul.004G095600 Secondary Identifier:  ? PAC:37162101
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.004G095600 0.5kb upstream 0.5kb upstream 8307 true Chr04: 15282684-15290990 Phaseolus vulgaris
Phvul.004G095600 0.5kb upstream 0.5kb upstream 500 false Chr04: 15282684-15283183 Phaseolus vulgaris
Phvul.004G095600 0.5kb downstream 0.5kb downstream 8307 true Chr04: 15283184-15291490 Phaseolus vulgaris
Phvul.004G095600 0.5kb downstream 0.5kb downstream 500 false Chr04: 15290991-15291490 Phaseolus vulgaris
Phvul.004G095600 1.0kb upstream 1.0kb upstream 8807 true Chr04: 15282184-15290990 Phaseolus vulgaris
Phvul.004G095600 1.0kb upstream 1.0kb upstream 1000 false Chr04: 15282184-15283183 Phaseolus vulgaris
Phvul.004G095600 1.0kb downstream 1.0kb downstream 8807 true Chr04: 15283184-15291990 Phaseolus vulgaris
Phvul.004G095600 1.0kb downstream 1.0kb downstream 1000 false Chr04: 15290991-15291990 Phaseolus vulgaris
Phvul.004G095600 2.0kb upstream 2.0kb upstream 9807 true Chr04: 15281184-15290990 Phaseolus vulgaris
Phvul.004G095600 2.0kb upstream 2.0kb upstream 2000 false Chr04: 15281184-15283183 Phaseolus vulgaris
Phvul.004G095600 2.0kb downstream 2.0kb downstream 9807 true Chr04: 15283184-15292990 Phaseolus vulgaris
Phvul.004G095600 2.0kb downstream 2.0kb downstream 2000 false Chr04: 15290991-15292990 Phaseolus vulgaris
Phvul.004G095600 5.0kb upstream 5.0kb upstream 12807 true Chr04: 15278184-15290990 Phaseolus vulgaris
Phvul.004G095600 5.0kb upstream 5.0kb upstream 5000 false Chr04: 15278184-15283183 Phaseolus vulgaris
Phvul.004G095600 5.0kb downstream 5.0kb downstream 12807 true Chr04: 15283184-15295990 Phaseolus vulgaris
Phvul.004G095600 5.0kb downstream 5.0kb downstream 5000 false Chr04: 15290991-15295990 Phaseolus vulgaris
Phvul.004G095600 10.0kb upstream 10.0kb upstream 17807 true Chr04: 15273184-15290990 Phaseolus vulgaris
Phvul.004G095600 10.0kb upstream 10.0kb upstream 10000 false Chr04: 15273184-15283183 Phaseolus vulgaris
Phvul.004G095600 10.0kb downstream 10.0kb downstream 17807 true Chr04: 15283184-15300990 Phaseolus vulgaris
Phvul.004G095600 10.0kb downstream 10.0kb downstream 10000 false Chr04: 15290991-15300990 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304369 5265 Fabidae View MSA
124062855 5270 Rosid View MSA
123737964 5271 Pentapetalae View MSA
122790118 5272 Eudicot View MSA
122046497 5273 Angiosperm View MSA
121344254 5274 Embryophyte View MSA
123426727 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.27545 0.0 11.8433   Low
cufflinks 6.63599 0.0 17.7388    
cufflinks 6.21424 0.0 16.6697    
cufflinks 4.1072 0.0 11.4574   Low
cufflinks 7.16871 0.0 19.0427    
cufflinks 5.3832 0.0 14.632    
cufflinks 6.45258 0.0 17.2611    
cufflinks 5.59177 0.0 15.1153    
cufflinks 7.51348 0.0 19.9275   High
cufflinks 7.94513 0.0 20.9696   High
cufflinks 5.2075 0.0 14.2012    

0 Strain