Gene : Phvul.007G042700 P. vulgaris v2.1
Defline:  (1 of 16) PF12854//PF13041 - PPR repeat (PPR_1) // PPR repeat family (PPR_2) Genomic Order:  424
Name:  ? Phvul.007G042700 Secondary Identifier:  ? PAC:37165270
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.007G042700 0.5kb upstream 0.5kb upstream 3313 true Chr07: 3478133-3481445 Phaseolus vulgaris
Phvul.007G042700 0.5kb upstream 0.5kb upstream 500 false Chr07: 3478133-3478632 Phaseolus vulgaris
Phvul.007G042700 0.5kb downstream 0.5kb downstream 3313 true Chr07: 3478633-3481945 Phaseolus vulgaris
Phvul.007G042700 0.5kb downstream 0.5kb downstream 500 false Chr07: 3481446-3481945 Phaseolus vulgaris
Phvul.007G042700 1.0kb upstream 1.0kb upstream 3813 true Chr07: 3477633-3481445 Phaseolus vulgaris
Phvul.007G042700 1.0kb upstream 1.0kb upstream 1000 false Chr07: 3477633-3478632 Phaseolus vulgaris
Phvul.007G042700 1.0kb downstream 1.0kb downstream 3813 true Chr07: 3478633-3482445 Phaseolus vulgaris
Phvul.007G042700 1.0kb downstream 1.0kb downstream 1000 false Chr07: 3481446-3482445 Phaseolus vulgaris
Phvul.007G042700 2.0kb upstream 2.0kb upstream 4813 true Chr07: 3476633-3481445 Phaseolus vulgaris
Phvul.007G042700 2.0kb upstream 2.0kb upstream 2000 false Chr07: 3476633-3478632 Phaseolus vulgaris
Phvul.007G042700 2.0kb downstream 2.0kb downstream 4813 true Chr07: 3478633-3483445 Phaseolus vulgaris
Phvul.007G042700 2.0kb downstream 2.0kb downstream 2000 false Chr07: 3481446-3483445 Phaseolus vulgaris
Phvul.007G042700 5.0kb upstream 5.0kb upstream 7813 true Chr07: 3473633-3481445 Phaseolus vulgaris
Phvul.007G042700 5.0kb upstream 5.0kb upstream 5000 false Chr07: 3473633-3478632 Phaseolus vulgaris
Phvul.007G042700 5.0kb downstream 5.0kb downstream 7813 true Chr07: 3478633-3486445 Phaseolus vulgaris
Phvul.007G042700 5.0kb downstream 5.0kb downstream 5000 false Chr07: 3481446-3486445 Phaseolus vulgaris
Phvul.007G042700 10.0kb upstream 10.0kb upstream 12813 true Chr07: 3468633-3481445 Phaseolus vulgaris
Phvul.007G042700 10.0kb upstream 10.0kb upstream 10000 false Chr07: 3468633-3478632 Phaseolus vulgaris
Phvul.007G042700 10.0kb downstream 10.0kb downstream 12813 true Chr07: 3478633-3491445 Phaseolus vulgaris
Phvul.007G042700 10.0kb downstream 10.0kb downstream 10000 false Chr07: 3481446-3491445 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302032 5265 Fabidae View MSA
124063650 5270 Rosid View MSA
123744413 5271 Pentapetalae View MSA
122789799 5272 Eudicot View MSA
122051295 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121349652 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.52577 0.0 7.38388    
cufflinks 3.62924 0.0 10.2385    
cufflinks 1.51266 0.0 4.68187   Low
cufflinks 2.17275 0.0 6.53987    
cufflinks 2.40573 0.0 7.09808    
cufflinks 3.36969 0.0 9.55553    
cufflinks 3.25501 0.0 9.25688    
cufflinks 4.18542 0.0 11.6014   High
cufflinks 3.09097 0.0 8.88124    
cufflinks 3.33004 0.0 9.48062    
cufflinks 2.72852 0.0 7.94587    

0 Strain