Gene : Phvul.007G046900 P. vulgaris v2.1
Defline:  (1 of 1) 2.1.1.193 - 16S rRNA (uracil(1498)-N(3))-methyltransferase / M(3)U(1498) specific methyltransferase Genomic Order:  467
Name:  ? Phvul.007G046900 Secondary Identifier:  ? PAC:37165280
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.007G046900 0.5kb upstream 0.5kb upstream 3678 true Chr07: 3830058-3833735 Phaseolus vulgaris
Phvul.007G046900 0.5kb upstream 0.5kb upstream 500 false Chr07: 3833236-3833735 Phaseolus vulgaris
Phvul.007G046900 0.5kb downstream 0.5kb downstream 3678 true Chr07: 3829558-3833235 Phaseolus vulgaris
Phvul.007G046900 0.5kb downstream 0.5kb downstream 500 false Chr07: 3829558-3830057 Phaseolus vulgaris
Phvul.007G046900 1.0kb upstream 1.0kb upstream 4178 true Chr07: 3830058-3834235 Phaseolus vulgaris
Phvul.007G046900 1.0kb upstream 1.0kb upstream 1000 false Chr07: 3833236-3834235 Phaseolus vulgaris
Phvul.007G046900 1.0kb downstream 1.0kb downstream 4178 true Chr07: 3829058-3833235 Phaseolus vulgaris
Phvul.007G046900 1.0kb downstream 1.0kb downstream 1000 false Chr07: 3829058-3830057 Phaseolus vulgaris
Phvul.007G046900 2.0kb upstream 2.0kb upstream 5178 true Chr07: 3830058-3835235 Phaseolus vulgaris
Phvul.007G046900 2.0kb upstream 2.0kb upstream 2000 false Chr07: 3833236-3835235 Phaseolus vulgaris
Phvul.007G046900 2.0kb downstream 2.0kb downstream 5178 true Chr07: 3828058-3833235 Phaseolus vulgaris
Phvul.007G046900 2.0kb downstream 2.0kb downstream 2000 false Chr07: 3828058-3830057 Phaseolus vulgaris
Phvul.007G046900 5.0kb upstream 5.0kb upstream 8178 true Chr07: 3830058-3838235 Phaseolus vulgaris
Phvul.007G046900 5.0kb upstream 5.0kb upstream 5000 false Chr07: 3833236-3838235 Phaseolus vulgaris
Phvul.007G046900 5.0kb downstream 5.0kb downstream 8178 true Chr07: 3825058-3833235 Phaseolus vulgaris
Phvul.007G046900 5.0kb downstream 5.0kb downstream 5000 false Chr07: 3825058-3830057 Phaseolus vulgaris
Phvul.007G046900 10.0kb upstream 10.0kb upstream 13178 true Chr07: 3830058-3843235 Phaseolus vulgaris
Phvul.007G046900 10.0kb upstream 10.0kb upstream 10000 false Chr07: 3833236-3843235 Phaseolus vulgaris
Phvul.007G046900 10.0kb downstream 10.0kb downstream 13178 true Chr07: 3820058-3833235 Phaseolus vulgaris
Phvul.007G046900 10.0kb downstream 10.0kb downstream 10000 false Chr07: 3820058-3830057 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303652 5265 Fabidae View MSA
124070022 5270 Rosid View MSA
123738955 5271 Pentapetalae View MSA
122790203 5272 Eudicot View MSA
122046212 5273 Angiosperm View MSA
121345498 5274 Embryophyte View MSA
123427980 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.616439 0.0 3.94977   Low
cufflinks 1.58096 0.0 8.84525    
cufflinks 1.08121 0.0 6.27963    
cufflinks 0.969162 0.0 4.273    
cufflinks 1.20777 0.0 5.27049    
cufflinks 1.55711 0.0 6.42497    
cufflinks 1.34954 0.0 5.77258    
cufflinks 1.6524 0.0 6.75158    
cufflinks 1.1391 0.0 6.78678    
cufflinks 0.305064 0.0 1.21317 Low Low
cufflinks 1.09965 0.0 6.31006    

0 Strain