Gene : Phvul.004G106000 P. vulgaris v2.1
Defline:  (1 of 425) PF01535 - PPR repeat (PPR) Genomic Order:  1081
Name:  ? Phvul.004G106000 Secondary Identifier:  ? PAC:37161859
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.004G106000 0.5kb upstream 0.5kb upstream 4946 true Chr04: 35263984-35268929 Phaseolus vulgaris
Phvul.004G106000 0.5kb upstream 0.5kb upstream 500 false Chr04: 35268430-35268929 Phaseolus vulgaris
Phvul.004G106000 0.5kb downstream 0.5kb downstream 4946 true Chr04: 35263484-35268429 Phaseolus vulgaris
Phvul.004G106000 0.5kb downstream 0.5kb downstream 500 false Chr04: 35263484-35263983 Phaseolus vulgaris
Phvul.004G106000 1.0kb upstream 1.0kb upstream 5446 true Chr04: 35263984-35269429 Phaseolus vulgaris
Phvul.004G106000 1.0kb upstream 1.0kb upstream 1000 false Chr04: 35268430-35269429 Phaseolus vulgaris
Phvul.004G106000 1.0kb downstream 1.0kb downstream 5446 true Chr04: 35262984-35268429 Phaseolus vulgaris
Phvul.004G106000 1.0kb downstream 1.0kb downstream 1000 false Chr04: 35262984-35263983 Phaseolus vulgaris
Phvul.004G106000 2.0kb upstream 2.0kb upstream 6446 true Chr04: 35263984-35270429 Phaseolus vulgaris
Phvul.004G106000 2.0kb upstream 2.0kb upstream 2000 false Chr04: 35268430-35270429 Phaseolus vulgaris
Phvul.004G106000 2.0kb downstream 2.0kb downstream 6446 true Chr04: 35261984-35268429 Phaseolus vulgaris
Phvul.004G106000 2.0kb downstream 2.0kb downstream 2000 false Chr04: 35261984-35263983 Phaseolus vulgaris
Phvul.004G106000 5.0kb upstream 5.0kb upstream 9446 true Chr04: 35263984-35273429 Phaseolus vulgaris
Phvul.004G106000 5.0kb upstream 5.0kb upstream 5000 false Chr04: 35268430-35273429 Phaseolus vulgaris
Phvul.004G106000 5.0kb downstream 5.0kb downstream 9446 true Chr04: 35258984-35268429 Phaseolus vulgaris
Phvul.004G106000 5.0kb downstream 5.0kb downstream 5000 false Chr04: 35258984-35263983 Phaseolus vulgaris
Phvul.004G106000 10.0kb upstream 10.0kb upstream 14446 true Chr04: 35263984-35278429 Phaseolus vulgaris
Phvul.004G106000 10.0kb upstream 10.0kb upstream 10000 false Chr04: 35268430-35278429 Phaseolus vulgaris
Phvul.004G106000 10.0kb downstream 10.0kb downstream 14446 true Chr04: 35253984-35268429 Phaseolus vulgaris
Phvul.004G106000 10.0kb downstream 10.0kb downstream 10000 false Chr04: 35253984-35263983 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300362 5265 Fabidae View MSA
124068830 5270 Rosid View MSA
123749334 5271 Pentapetalae View MSA
122792381 5272 Eudicot View MSA
122041960 5273 Angiosperm View MSA
121348427 5274 Embryophyte View MSA
123380862 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.88625 0.0 21.5299    
cufflinks 5.45921 0.0 15.4407    
cufflinks 19.672 0.0 50.9277   High
cufflinks 3.29373 0.0 9.92634    
cufflinks 2.88511 0.0 8.84619    
cufflinks 9.81502 0.0 26.3529   High
cufflinks 1.43028 0.0 4.70399   Low
cufflinks 1.38366 0.0 4.53235   Low
cufflinks 1.35965 0.0 4.5025   Low
cufflinks 5.82584 0.0 16.4043    
cufflinks 2.17045 0.0 6.85685    

0 Strain