Gene : Phvul.004G086100 P. vulgaris v2.1
Defline:  (1 of 1) PTHR12161:SF21 - REGULATOR OF VPS4 ACTIVITY IN THE MVB PATHWAY PROTEIN Genomic Order:  996
Name:  ? Phvul.004G086100 Secondary Identifier:  ? PAC:37161970
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.004G086100 0.5kb upstream 0.5kb upstream 4930 true Chr04: 28420657-28425586 Phaseolus vulgaris
Phvul.004G086100 0.5kb upstream 0.5kb upstream 500 false Chr04: 28425087-28425586 Phaseolus vulgaris
Phvul.004G086100 0.5kb downstream 0.5kb downstream 4930 true Chr04: 28420157-28425086 Phaseolus vulgaris
Phvul.004G086100 0.5kb downstream 0.5kb downstream 500 false Chr04: 28420157-28420656 Phaseolus vulgaris
Phvul.004G086100 1.0kb upstream 1.0kb upstream 5430 true Chr04: 28420657-28426086 Phaseolus vulgaris
Phvul.004G086100 1.0kb upstream 1.0kb upstream 1000 false Chr04: 28425087-28426086 Phaseolus vulgaris
Phvul.004G086100 1.0kb downstream 1.0kb downstream 5430 true Chr04: 28419657-28425086 Phaseolus vulgaris
Phvul.004G086100 1.0kb downstream 1.0kb downstream 1000 false Chr04: 28419657-28420656 Phaseolus vulgaris
Phvul.004G086100 2.0kb upstream 2.0kb upstream 6430 true Chr04: 28420657-28427086 Phaseolus vulgaris
Phvul.004G086100 2.0kb upstream 2.0kb upstream 2000 false Chr04: 28425087-28427086 Phaseolus vulgaris
Phvul.004G086100 2.0kb downstream 2.0kb downstream 6430 true Chr04: 28418657-28425086 Phaseolus vulgaris
Phvul.004G086100 2.0kb downstream 2.0kb downstream 2000 false Chr04: 28418657-28420656 Phaseolus vulgaris
Phvul.004G086100 5.0kb upstream 5.0kb upstream 9430 true Chr04: 28420657-28430086 Phaseolus vulgaris
Phvul.004G086100 5.0kb upstream 5.0kb upstream 5000 false Chr04: 28425087-28430086 Phaseolus vulgaris
Phvul.004G086100 5.0kb downstream 5.0kb downstream 9430 true Chr04: 28415657-28425086 Phaseolus vulgaris
Phvul.004G086100 5.0kb downstream 5.0kb downstream 5000 false Chr04: 28415657-28420656 Phaseolus vulgaris
Phvul.004G086100 10.0kb upstream 10.0kb upstream 14430 true Chr04: 28420657-28435086 Phaseolus vulgaris
Phvul.004G086100 10.0kb upstream 10.0kb upstream 10000 false Chr04: 28425087-28435086 Phaseolus vulgaris
Phvul.004G086100 10.0kb downstream 10.0kb downstream 14430 true Chr04: 28410657-28425086 Phaseolus vulgaris
Phvul.004G086100 10.0kb downstream 10.0kb downstream 10000 false Chr04: 28410657-28420656 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301287 5265 Fabidae View MSA
124068076 5270 Rosid View MSA
123736868 5271 Pentapetalae View MSA
122789571 5272 Eudicot View MSA
122045314 5273 Angiosperm View MSA
121350449 5274 Embryophyte View MSA
123424640 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.2162 0.0 39.6134    
cufflinks 9.77391 0.0 26.13   Low
cufflinks 12.3399 0.0 32.3948    
cufflinks 16.9644 0.0 44.0353    
cufflinks 14.6259 0.0 38.2536    
cufflinks 9.84123 0.0 26.2706   Low
cufflinks 11.2755 0.0 29.8507    
cufflinks 11.27 0.0 29.7488    
cufflinks 15.29 0.0 39.8431    
cufflinks 23.5779 0.0 60.9448   High
cufflinks 17.2819 0.0 44.9066    

0 Strain