Gene : Phvul.007G035400 P. vulgaris v2.1
Defline:  (1 of 1) PF16669 - Tetratricopeptide repeat protein 5 OB fold domain (TTC5_OB) Genomic Order:  352
Name:  ? Phvul.007G035400 Secondary Identifier:  ? PAC:37165324
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.007G035400 0.5kb upstream 0.5kb upstream 10193 true Chr07: 2895169-2905361 Phaseolus vulgaris
Phvul.007G035400 0.5kb upstream 0.5kb upstream 500 false Chr07: 2904862-2905361 Phaseolus vulgaris
Phvul.007G035400 0.5kb downstream 0.5kb downstream 10193 true Chr07: 2894669-2904861 Phaseolus vulgaris
Phvul.007G035400 0.5kb downstream 0.5kb downstream 500 false Chr07: 2894669-2895168 Phaseolus vulgaris
Phvul.007G035400 1.0kb upstream 1.0kb upstream 10693 true Chr07: 2895169-2905861 Phaseolus vulgaris
Phvul.007G035400 1.0kb upstream 1.0kb upstream 1000 false Chr07: 2904862-2905861 Phaseolus vulgaris
Phvul.007G035400 1.0kb downstream 1.0kb downstream 10693 true Chr07: 2894169-2904861 Phaseolus vulgaris
Phvul.007G035400 1.0kb downstream 1.0kb downstream 1000 false Chr07: 2894169-2895168 Phaseolus vulgaris
Phvul.007G035400 2.0kb upstream 2.0kb upstream 11693 true Chr07: 2895169-2906861 Phaseolus vulgaris
Phvul.007G035400 2.0kb upstream 2.0kb upstream 2000 false Chr07: 2904862-2906861 Phaseolus vulgaris
Phvul.007G035400 2.0kb downstream 2.0kb downstream 11693 true Chr07: 2893169-2904861 Phaseolus vulgaris
Phvul.007G035400 2.0kb downstream 2.0kb downstream 2000 false Chr07: 2893169-2895168 Phaseolus vulgaris
Phvul.007G035400 5.0kb upstream 5.0kb upstream 14693 true Chr07: 2895169-2909861 Phaseolus vulgaris
Phvul.007G035400 5.0kb upstream 5.0kb upstream 5000 false Chr07: 2904862-2909861 Phaseolus vulgaris
Phvul.007G035400 5.0kb downstream 5.0kb downstream 14693 true Chr07: 2890169-2904861 Phaseolus vulgaris
Phvul.007G035400 5.0kb downstream 5.0kb downstream 5000 false Chr07: 2890169-2895168 Phaseolus vulgaris
Phvul.007G035400 10.0kb upstream 10.0kb upstream 19693 true Chr07: 2895169-2914861 Phaseolus vulgaris
Phvul.007G035400 10.0kb upstream 10.0kb upstream 10000 false Chr07: 2904862-2914861 Phaseolus vulgaris
Phvul.007G035400 10.0kb downstream 10.0kb downstream 19693 true Chr07: 2885169-2904861 Phaseolus vulgaris
Phvul.007G035400 10.0kb downstream 10.0kb downstream 10000 false Chr07: 2885169-2895168 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305603 5265 Fabidae View MSA
124069629 5270 Rosid View MSA
123742575 5271 Pentapetalae View MSA
122794271 5272 Eudicot View MSA
122048209 5273 Angiosperm View MSA
121349212 5274 Embryophyte View MSA
123425821 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.0913 0.0 19.2884    
cufflinks 3.18597 0.0 13.9916    
cufflinks 5.163 0.0 18.2432   High
cufflinks 3.45713 0.0 11.1197    
cufflinks 3.49815 0.0 19.5873    
cufflinks 3.52927 0.0 11.2416    
cufflinks 5.12839 0.0 37.1526   High
cufflinks 6.06004 0.0 33.1043   High
cufflinks 4.96339 0.0 19.0811    
cufflinks 3.43867 0.0 20.169    
cufflinks 2.95973 0.0 13.4635   Low

0 Strain