Gene : Phvul.007G037500 P. vulgaris v2.1
Defline:  (1 of 9) PF13041//PF13812 - PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  371
Name:  ? Phvul.007G037500 Secondary Identifier:  ? PAC:37164354
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.007G037500 0.5kb upstream 0.5kb upstream 2627 true Chr07: 3048764-3051390 Phaseolus vulgaris
Phvul.007G037500 0.5kb upstream 0.5kb upstream 500 false Chr07: 3048764-3049263 Phaseolus vulgaris
Phvul.007G037500 0.5kb downstream 0.5kb downstream 2627 true Chr07: 3049264-3051890 Phaseolus vulgaris
Phvul.007G037500 0.5kb downstream 0.5kb downstream 500 false Chr07: 3051391-3051890 Phaseolus vulgaris
Phvul.007G037500 1.0kb upstream 1.0kb upstream 3127 true Chr07: 3048264-3051390 Phaseolus vulgaris
Phvul.007G037500 1.0kb upstream 1.0kb upstream 1000 false Chr07: 3048264-3049263 Phaseolus vulgaris
Phvul.007G037500 1.0kb downstream 1.0kb downstream 3127 true Chr07: 3049264-3052390 Phaseolus vulgaris
Phvul.007G037500 1.0kb downstream 1.0kb downstream 1000 false Chr07: 3051391-3052390 Phaseolus vulgaris
Phvul.007G037500 2.0kb upstream 2.0kb upstream 4127 true Chr07: 3047264-3051390 Phaseolus vulgaris
Phvul.007G037500 2.0kb upstream 2.0kb upstream 2000 false Chr07: 3047264-3049263 Phaseolus vulgaris
Phvul.007G037500 2.0kb downstream 2.0kb downstream 4127 true Chr07: 3049264-3053390 Phaseolus vulgaris
Phvul.007G037500 2.0kb downstream 2.0kb downstream 2000 false Chr07: 3051391-3053390 Phaseolus vulgaris
Phvul.007G037500 5.0kb upstream 5.0kb upstream 7127 true Chr07: 3044264-3051390 Phaseolus vulgaris
Phvul.007G037500 5.0kb upstream 5.0kb upstream 5000 false Chr07: 3044264-3049263 Phaseolus vulgaris
Phvul.007G037500 5.0kb downstream 5.0kb downstream 7127 true Chr07: 3049264-3056390 Phaseolus vulgaris
Phvul.007G037500 5.0kb downstream 5.0kb downstream 5000 false Chr07: 3051391-3056390 Phaseolus vulgaris
Phvul.007G037500 10.0kb upstream 10.0kb upstream 12127 true Chr07: 3039264-3051390 Phaseolus vulgaris
Phvul.007G037500 10.0kb upstream 10.0kb upstream 10000 false Chr07: 3039264-3049263 Phaseolus vulgaris
Phvul.007G037500 10.0kb downstream 10.0kb downstream 12127 true Chr07: 3049264-3061390 Phaseolus vulgaris
Phvul.007G037500 10.0kb downstream 10.0kb downstream 10000 false Chr07: 3051391-3061390 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300887 5265 Fabidae View MSA
124063313 5270 Rosid View MSA
123738652 5271 Pentapetalae View MSA
122793005 5272 Eudicot View MSA
122045173 5273 Angiosperm View MSA
121310410 5274 Embryophyte View MSA
123347900 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.85143 0.0 5.79355    
cufflinks 2.25664 0.0 6.90572   High
cufflinks 0.930218 0.0 3.15298   Low
cufflinks 2.65596 0.0 8.02458   High
cufflinks 1.49956 0.0 4.81645    
cufflinks 1.80179 0.0 5.66325    
cufflinks 0.981373 0.0 3.29687   Low
cufflinks 2.03086 0.0 6.28881    
cufflinks 1.4267 0.0 4.60215    
cufflinks 1.51854 0.0 4.8593    
cufflinks 1.60294 0.0 5.10475    

0 Strain