Gene : Phvul.007G040700 P. vulgaris v2.1
Defline:  (1 of 2) 2.7.1.100 - S-methyl-5-thioribose kinase / MTR kinase Genomic Order:  404
Name:  ? Phvul.007G040700 Secondary Identifier:  ? PAC:37167179
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-6754 Phaseolus vulgaris pathologic  
Pvulgaris PWY-7270 Phaseolus vulgaris pathologic  
Pvulgaris PWY-7528 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.007G040700 0.5kb upstream 0.5kb upstream 4207 true Chr07: 3333402-3337608 Phaseolus vulgaris
Phvul.007G040700 0.5kb upstream 0.5kb upstream 500 false Chr07: 3333402-3333901 Phaseolus vulgaris
Phvul.007G040700 0.5kb downstream 0.5kb downstream 4207 true Chr07: 3333902-3338108 Phaseolus vulgaris
Phvul.007G040700 0.5kb downstream 0.5kb downstream 500 false Chr07: 3337609-3338108 Phaseolus vulgaris
Phvul.007G040700 1.0kb upstream 1.0kb upstream 4707 true Chr07: 3332902-3337608 Phaseolus vulgaris
Phvul.007G040700 1.0kb upstream 1.0kb upstream 1000 false Chr07: 3332902-3333901 Phaseolus vulgaris
Phvul.007G040700 1.0kb downstream 1.0kb downstream 4707 true Chr07: 3333902-3338608 Phaseolus vulgaris
Phvul.007G040700 1.0kb downstream 1.0kb downstream 1000 false Chr07: 3337609-3338608 Phaseolus vulgaris
Phvul.007G040700 2.0kb upstream 2.0kb upstream 5707 true Chr07: 3331902-3337608 Phaseolus vulgaris
Phvul.007G040700 2.0kb upstream 2.0kb upstream 2000 false Chr07: 3331902-3333901 Phaseolus vulgaris
Phvul.007G040700 2.0kb downstream 2.0kb downstream 5707 true Chr07: 3333902-3339608 Phaseolus vulgaris
Phvul.007G040700 2.0kb downstream 2.0kb downstream 2000 false Chr07: 3337609-3339608 Phaseolus vulgaris
Phvul.007G040700 5.0kb upstream 5.0kb upstream 8707 true Chr07: 3328902-3337608 Phaseolus vulgaris
Phvul.007G040700 5.0kb upstream 5.0kb upstream 5000 false Chr07: 3328902-3333901 Phaseolus vulgaris
Phvul.007G040700 5.0kb downstream 5.0kb downstream 8707 true Chr07: 3333902-3342608 Phaseolus vulgaris
Phvul.007G040700 5.0kb downstream 5.0kb downstream 5000 false Chr07: 3337609-3342608 Phaseolus vulgaris
Phvul.007G040700 10.0kb upstream 10.0kb upstream 13707 true Chr07: 3323902-3337608 Phaseolus vulgaris
Phvul.007G040700 10.0kb upstream 10.0kb upstream 10000 false Chr07: 3323902-3333901 Phaseolus vulgaris
Phvul.007G040700 10.0kb downstream 10.0kb downstream 13707 true Chr07: 3333902-3347608 Phaseolus vulgaris
Phvul.007G040700 10.0kb downstream 10.0kb downstream 10000 false Chr07: 3337609-3347608 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299061 5265 Fabidae View MSA
124062440 5270 Rosid View MSA
123739159 5271 Pentapetalae View MSA
122789727 5272 Eudicot View MSA
122050497 5273 Angiosperm View MSA
121311946 5274 Embryophyte View MSA
123349171 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 42.7229 0.0 111.148 High High
cufflinks 17.6559 0.0 46.2335    
cufflinks 60.1896 0.0 159.091 High High
cufflinks 8.46199 0.0 23.4747   Low
cufflinks 19.5133 0.0 50.9681    
cufflinks 8.33258 0.0 23.0914   Low
cufflinks 11.9779 0.0 32.2266    
cufflinks 7.96823 0.0 22.1731   Low
cufflinks 20.1615 0.0 52.5585    
cufflinks 64.1822 0.0 170.224 High High
cufflinks 18.2647 0.0 47.8475    

0 Strain