Gene : Phvul.004G091988 P. vulgaris v2.1
Defline:  (1 of 13) K08912 - light-harvesting complex II chlorophyll a/b binding protein 1 (LHCB1) Genomic Order:  954
Name:  ? Phvul.004G091988 Secondary Identifier:  ? PAC:37162041
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.004G091988 0.5kb upstream 0.5kb upstream 1251 true Chr04: 23128705-23129955 Phaseolus vulgaris
Phvul.004G091988 0.5kb upstream 0.5kb upstream 500 false Chr04: 23128705-23129204 Phaseolus vulgaris
Phvul.004G091988 0.5kb downstream 0.5kb downstream 1251 true Chr04: 23129205-23130455 Phaseolus vulgaris
Phvul.004G091988 0.5kb downstream 0.5kb downstream 500 false Chr04: 23129956-23130455 Phaseolus vulgaris
Phvul.004G091988 1.0kb upstream 1.0kb upstream 1751 true Chr04: 23128205-23129955 Phaseolus vulgaris
Phvul.004G091988 1.0kb upstream 1.0kb upstream 1000 false Chr04: 23128205-23129204 Phaseolus vulgaris
Phvul.004G091988 1.0kb downstream 1.0kb downstream 1751 true Chr04: 23129205-23130955 Phaseolus vulgaris
Phvul.004G091988 1.0kb downstream 1.0kb downstream 1000 false Chr04: 23129956-23130955 Phaseolus vulgaris
Phvul.004G091988 2.0kb upstream 2.0kb upstream 2751 true Chr04: 23127205-23129955 Phaseolus vulgaris
Phvul.004G091988 2.0kb upstream 2.0kb upstream 2000 false Chr04: 23127205-23129204 Phaseolus vulgaris
Phvul.004G091988 2.0kb downstream 2.0kb downstream 2751 true Chr04: 23129205-23131955 Phaseolus vulgaris
Phvul.004G091988 2.0kb downstream 2.0kb downstream 2000 false Chr04: 23129956-23131955 Phaseolus vulgaris
Phvul.004G091988 5.0kb upstream 5.0kb upstream 5751 true Chr04: 23124205-23129955 Phaseolus vulgaris
Phvul.004G091988 5.0kb upstream 5.0kb upstream 5000 false Chr04: 23124205-23129204 Phaseolus vulgaris
Phvul.004G091988 5.0kb downstream 5.0kb downstream 5751 true Chr04: 23129205-23134955 Phaseolus vulgaris
Phvul.004G091988 5.0kb downstream 5.0kb downstream 5000 false Chr04: 23129956-23134955 Phaseolus vulgaris
Phvul.004G091988 10.0kb upstream 10.0kb upstream 10751 true Chr04: 23119205-23129955 Phaseolus vulgaris
Phvul.004G091988 10.0kb upstream 10.0kb upstream 10000 false Chr04: 23119205-23129204 Phaseolus vulgaris
Phvul.004G091988 10.0kb downstream 10.0kb downstream 10751 true Chr04: 23129205-23139955 Phaseolus vulgaris
Phvul.004G091988 10.0kb downstream 10.0kb downstream 10000 false Chr04: 23129956-23139955 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122253412 5265 Fabidae View MSA
124051137 5270 Rosid View MSA
123751711 5271 Pentapetalae View MSA
122794402 5272 Eudicot View MSA
122050341 5273 Angiosperm View MSA
121349648 5274 Embryophyte View MSA
123426313 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 76.0258 0.0 197.055 High  
cufflinks 231.213 0.0 649.137 High  
cufflinks 2622.95 0.0 12196.6 High High
cufflinks 74.0534 0.0 191.741 High  
cufflinks 340.814 0.0 1013.64 High  
cufflinks 746.54 0.0 2518.24 High  
cufflinks 0.227278 0.0 0.950323 Low Low
cufflinks 0.189458 0.0 0.808601 Low Low
cufflinks 0.401986 0.0 1.60831 Low Low
cufflinks 21.0416 0.0 57.1194    
cufflinks 147.778 0.0 398.264 High  

0 Strain