Gene : Phvul.007G040600 P. vulgaris v2.1
Defline:  (1 of 2) 1.1.1.95 - Phosphoglycerate dehydrogenase / Phosphoglyceric acid dehydrogenase Genomic Order:  403
Name:  ? Phvul.007G040600 Secondary Identifier:  ? PAC:37165622
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris SER-GLYSYN-PWY Phaseolus vulgaris pathologic  
Pvulgaris SERSYN-PWY Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.007G040600 0.5kb upstream 0.5kb upstream 3538 true Chr07: 3325913-3329450 Phaseolus vulgaris
Phvul.007G040600 0.5kb upstream 0.5kb upstream 500 false Chr07: 3325913-3326412 Phaseolus vulgaris
Phvul.007G040600 0.5kb downstream 0.5kb downstream 3538 true Chr07: 3326413-3329950 Phaseolus vulgaris
Phvul.007G040600 0.5kb downstream 0.5kb downstream 500 false Chr07: 3329451-3329950 Phaseolus vulgaris
Phvul.007G040600 1.0kb upstream 1.0kb upstream 4038 true Chr07: 3325413-3329450 Phaseolus vulgaris
Phvul.007G040600 1.0kb upstream 1.0kb upstream 1000 false Chr07: 3325413-3326412 Phaseolus vulgaris
Phvul.007G040600 1.0kb downstream 1.0kb downstream 4038 true Chr07: 3326413-3330450 Phaseolus vulgaris
Phvul.007G040600 1.0kb downstream 1.0kb downstream 1000 false Chr07: 3329451-3330450 Phaseolus vulgaris
Phvul.007G040600 2.0kb upstream 2.0kb upstream 5038 true Chr07: 3324413-3329450 Phaseolus vulgaris
Phvul.007G040600 2.0kb upstream 2.0kb upstream 2000 false Chr07: 3324413-3326412 Phaseolus vulgaris
Phvul.007G040600 2.0kb downstream 2.0kb downstream 5038 true Chr07: 3326413-3331450 Phaseolus vulgaris
Phvul.007G040600 2.0kb downstream 2.0kb downstream 2000 false Chr07: 3329451-3331450 Phaseolus vulgaris
Phvul.007G040600 5.0kb upstream 5.0kb upstream 8038 true Chr07: 3321413-3329450 Phaseolus vulgaris
Phvul.007G040600 5.0kb upstream 5.0kb upstream 5000 false Chr07: 3321413-3326412 Phaseolus vulgaris
Phvul.007G040600 5.0kb downstream 5.0kb downstream 8038 true Chr07: 3326413-3334450 Phaseolus vulgaris
Phvul.007G040600 5.0kb downstream 5.0kb downstream 5000 false Chr07: 3329451-3334450 Phaseolus vulgaris
Phvul.007G040600 10.0kb upstream 10.0kb upstream 13038 true Chr07: 3316413-3329450 Phaseolus vulgaris
Phvul.007G040600 10.0kb upstream 10.0kb upstream 10000 false Chr07: 3316413-3326412 Phaseolus vulgaris
Phvul.007G040600 10.0kb downstream 10.0kb downstream 13038 true Chr07: 3326413-3339450 Phaseolus vulgaris
Phvul.007G040600 10.0kb downstream 10.0kb downstream 10000 false Chr07: 3329451-3339450 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305922 5265 Fabidae View MSA
124071894 5270 Rosid View MSA
123750282 5271 Pentapetalae View MSA
122795023 5272 Eudicot View MSA
122044765 5273 Angiosperm View MSA
121347094 5274 Embryophyte View MSA
123427510 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 17.4191 0.0 45.025    
cufflinks 41.5254 0.0 111.157 High High
cufflinks 11.1469 0.0 29.143   Low
cufflinks 18.4101 0.0 47.5932    
cufflinks 20.4833 0.0 53.0197    
cufflinks 11.1888 0.0 29.2072   Low
cufflinks 15.0113 0.0 38.8215    
cufflinks 22.7376 0.0 58.9231    
cufflinks 26.5486 0.0 69.2349    
cufflinks 16.1767 0.0 41.8214    
cufflinks 17.1148 0.0 44.2392    

0 Strain