Gene : Phvul.004G093194 P. vulgaris v2.1
Defline:  (1 of 13) K08912 - light-harvesting complex II chlorophyll a/b binding protein 1 (LHCB1) Genomic Order:  947
Name:  ? Phvul.004G093194 Secondary Identifier:  ? PAC:37163554
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.004G093194 0.5kb upstream 0.5kb upstream 1485 true Chr04: 22507271-22508755 Phaseolus vulgaris
Phvul.004G093194 0.5kb upstream 0.5kb upstream 500 false Chr04: 22508256-22508755 Phaseolus vulgaris
Phvul.004G093194 0.5kb downstream 0.5kb downstream 1485 true Chr04: 22506771-22508255 Phaseolus vulgaris
Phvul.004G093194 0.5kb downstream 0.5kb downstream 500 false Chr04: 22506771-22507270 Phaseolus vulgaris
Phvul.004G093194 1.0kb upstream 1.0kb upstream 1985 true Chr04: 22507271-22509255 Phaseolus vulgaris
Phvul.004G093194 1.0kb upstream 1.0kb upstream 1000 false Chr04: 22508256-22509255 Phaseolus vulgaris
Phvul.004G093194 1.0kb downstream 1.0kb downstream 1985 true Chr04: 22506271-22508255 Phaseolus vulgaris
Phvul.004G093194 1.0kb downstream 1.0kb downstream 1000 false Chr04: 22506271-22507270 Phaseolus vulgaris
Phvul.004G093194 2.0kb upstream 2.0kb upstream 2985 true Chr04: 22507271-22510255 Phaseolus vulgaris
Phvul.004G093194 2.0kb upstream 2.0kb upstream 2000 false Chr04: 22508256-22510255 Phaseolus vulgaris
Phvul.004G093194 2.0kb downstream 2.0kb downstream 2985 true Chr04: 22505271-22508255 Phaseolus vulgaris
Phvul.004G093194 2.0kb downstream 2.0kb downstream 2000 false Chr04: 22505271-22507270 Phaseolus vulgaris
Phvul.004G093194 5.0kb upstream 5.0kb upstream 5985 true Chr04: 22507271-22513255 Phaseolus vulgaris
Phvul.004G093194 5.0kb upstream 5.0kb upstream 5000 false Chr04: 22508256-22513255 Phaseolus vulgaris
Phvul.004G093194 5.0kb downstream 5.0kb downstream 5985 true Chr04: 22502271-22508255 Phaseolus vulgaris
Phvul.004G093194 5.0kb downstream 5.0kb downstream 5000 false Chr04: 22502271-22507270 Phaseolus vulgaris
Phvul.004G093194 10.0kb upstream 10.0kb upstream 10985 true Chr04: 22507271-22518255 Phaseolus vulgaris
Phvul.004G093194 10.0kb upstream 10.0kb upstream 10000 false Chr04: 22508256-22518255 Phaseolus vulgaris
Phvul.004G093194 10.0kb downstream 10.0kb downstream 10985 true Chr04: 22497271-22508255 Phaseolus vulgaris
Phvul.004G093194 10.0kb downstream 10.0kb downstream 10000 false Chr04: 22497271-22507270 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122251563 5265 Fabidae Singleton cluster - no MSA
124072480 5270 Rosid View MSA
123751711 5271 Pentapetalae View MSA
122794402 5272 Eudicot View MSA
122050341 5273 Angiosperm View MSA
121349648 5274 Embryophyte View MSA
123426313 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 90.4795 0.0 240.763 High  
cufflinks 214.4 0.0 621.264 High  
cufflinks 3429.02 0.0 19190.4 High High
cufflinks 72.9331 0.0 191.414 High  
cufflinks 393.404 0.0 1271.81 High  
cufflinks 724.359 0.0 2622.72 High  
cufflinks 0.290888 0.0 1.16029 Low Low
cufflinks 0.0661511 0.0 0.302916 Low Low
cufflinks 0.710358 0.0 2.6429   Low
cufflinks 16.9724 0.0 45.6251    
cufflinks 170.439 0.0 482.871 High  

0 Strain