Gene : Phvul.004G092600 P. vulgaris v2.1
Defline:  (1 of 13) K08912 - light-harvesting complex II chlorophyll a/b binding protein 1 (LHCB1) Genomic Order:  957
Name:  ? Phvul.004G092600 Secondary Identifier:  ? PAC:37162541
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.004G092600 0.5kb upstream 0.5kb upstream 1801 true Chr04: 23319346-23321146 Phaseolus vulgaris
Phvul.004G092600 0.5kb upstream 0.5kb upstream 500 false Chr04: 23319346-23319845 Phaseolus vulgaris
Phvul.004G092600 0.5kb downstream 0.5kb downstream 1801 true Chr04: 23319846-23321646 Phaseolus vulgaris
Phvul.004G092600 0.5kb downstream 0.5kb downstream 500 false Chr04: 23321147-23321646 Phaseolus vulgaris
Phvul.004G092600 1.0kb upstream 1.0kb upstream 2301 true Chr04: 23318846-23321146 Phaseolus vulgaris
Phvul.004G092600 1.0kb upstream 1.0kb upstream 1000 false Chr04: 23318846-23319845 Phaseolus vulgaris
Phvul.004G092600 1.0kb downstream 1.0kb downstream 2301 true Chr04: 23319846-23322146 Phaseolus vulgaris
Phvul.004G092600 1.0kb downstream 1.0kb downstream 1000 false Chr04: 23321147-23322146 Phaseolus vulgaris
Phvul.004G092600 2.0kb upstream 2.0kb upstream 3301 true Chr04: 23317846-23321146 Phaseolus vulgaris
Phvul.004G092600 2.0kb upstream 2.0kb upstream 2000 false Chr04: 23317846-23319845 Phaseolus vulgaris
Phvul.004G092600 2.0kb downstream 2.0kb downstream 3301 true Chr04: 23319846-23323146 Phaseolus vulgaris
Phvul.004G092600 2.0kb downstream 2.0kb downstream 2000 false Chr04: 23321147-23323146 Phaseolus vulgaris
Phvul.004G092600 5.0kb upstream 5.0kb upstream 6301 true Chr04: 23314846-23321146 Phaseolus vulgaris
Phvul.004G092600 5.0kb upstream 5.0kb upstream 5000 false Chr04: 23314846-23319845 Phaseolus vulgaris
Phvul.004G092600 5.0kb downstream 5.0kb downstream 6301 true Chr04: 23319846-23326146 Phaseolus vulgaris
Phvul.004G092600 5.0kb downstream 5.0kb downstream 5000 false Chr04: 23321147-23326146 Phaseolus vulgaris
Phvul.004G092600 10.0kb upstream 10.0kb upstream 11301 true Chr04: 23309846-23321146 Phaseolus vulgaris
Phvul.004G092600 10.0kb upstream 10.0kb upstream 10000 false Chr04: 23309846-23319845 Phaseolus vulgaris
Phvul.004G092600 10.0kb downstream 10.0kb downstream 11301 true Chr04: 23319846-23331146 Phaseolus vulgaris
Phvul.004G092600 10.0kb downstream 10.0kb downstream 10000 false Chr04: 23321147-23331146 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122251662 5265 Fabidae Singleton cluster - no MSA
124072480 5270 Rosid View MSA
123751711 5271 Pentapetalae View MSA
122794402 5272 Eudicot View MSA
122050341 5273 Angiosperm View MSA
121349648 5274 Embryophyte View MSA
123426313 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 42.7103 0.0 110.724 High  
cufflinks 81.8674 0.0 219.591 High  
cufflinks 1634.39 0.0 7841.24 High High
cufflinks 46.0773 0.0 119.695 High  
cufflinks 96.136 0.0 262.999 High  
cufflinks 261.043 0.0 805.737 High  
cufflinks 0.124651 0.0 0.522594 Low Low
cufflinks 0.0707232 0.0 0.313421 Low Low
cufflinks 0.136239 0.0 0.567843 Low Low
cufflinks 8.28398 0.0 23.2251    
cufflinks 38.1756 0.0 98.7693 High  

0 Strain