Gene : Phvul.004G092694 P. vulgaris v2.1
Defline:  (1 of 13) K08912 - light-harvesting complex II chlorophyll a/b binding protein 1 (LHCB1) Genomic Order:  959
Name:  ? Phvul.004G092694 Secondary Identifier:  ? PAC:37161994
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.004G092694 0.5kb upstream 0.5kb upstream 1120 true Chr04: 23386909-23388028 Phaseolus vulgaris
Phvul.004G092694 0.5kb upstream 0.5kb upstream 500 false Chr04: 23387529-23388028 Phaseolus vulgaris
Phvul.004G092694 0.5kb downstream 0.5kb downstream 1120 true Chr04: 23386409-23387528 Phaseolus vulgaris
Phvul.004G092694 0.5kb downstream 0.5kb downstream 500 false Chr04: 23386409-23386908 Phaseolus vulgaris
Phvul.004G092694 1.0kb upstream 1.0kb upstream 1620 true Chr04: 23386909-23388528 Phaseolus vulgaris
Phvul.004G092694 1.0kb upstream 1.0kb upstream 1000 false Chr04: 23387529-23388528 Phaseolus vulgaris
Phvul.004G092694 1.0kb downstream 1.0kb downstream 1620 true Chr04: 23385909-23387528 Phaseolus vulgaris
Phvul.004G092694 1.0kb downstream 1.0kb downstream 1000 false Chr04: 23385909-23386908 Phaseolus vulgaris
Phvul.004G092694 2.0kb upstream 2.0kb upstream 2620 true Chr04: 23386909-23389528 Phaseolus vulgaris
Phvul.004G092694 2.0kb upstream 2.0kb upstream 2000 false Chr04: 23387529-23389528 Phaseolus vulgaris
Phvul.004G092694 2.0kb downstream 2.0kb downstream 2620 true Chr04: 23384909-23387528 Phaseolus vulgaris
Phvul.004G092694 2.0kb downstream 2.0kb downstream 2000 false Chr04: 23384909-23386908 Phaseolus vulgaris
Phvul.004G092694 5.0kb upstream 5.0kb upstream 5620 true Chr04: 23386909-23392528 Phaseolus vulgaris
Phvul.004G092694 5.0kb upstream 5.0kb upstream 5000 false Chr04: 23387529-23392528 Phaseolus vulgaris
Phvul.004G092694 5.0kb downstream 5.0kb downstream 5620 true Chr04: 23381909-23387528 Phaseolus vulgaris
Phvul.004G092694 5.0kb downstream 5.0kb downstream 5000 false Chr04: 23381909-23386908 Phaseolus vulgaris
Phvul.004G092694 10.0kb upstream 10.0kb upstream 10620 true Chr04: 23386909-23397528 Phaseolus vulgaris
Phvul.004G092694 10.0kb upstream 10.0kb upstream 10000 false Chr04: 23387529-23397528 Phaseolus vulgaris
Phvul.004G092694 10.0kb downstream 10.0kb downstream 10620 true Chr04: 23376909-23387528 Phaseolus vulgaris
Phvul.004G092694 10.0kb downstream 10.0kb downstream 10000 false Chr04: 23376909-23386908 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122253412 5265 Fabidae View MSA
124051137 5270 Rosid View MSA
123751711 5271 Pentapetalae View MSA
122794402 5272 Eudicot View MSA
122050341 5273 Angiosperm View MSA
121349648 5274 Embryophyte View MSA
123426313 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 31.3059 0.0 84.1348    
cufflinks 99.1025 0.0 256.794 High  
cufflinks 2233.47 0.0 9252.86 High High
cufflinks 46.338 0.0 121.385 High  
cufflinks 162.443 0.0 432.02 High  
cufflinks 310.431 0.0 872.987 High  
cufflinks 0.113552 0.0 0.521252 Low Low
cufflinks 0.0475261 0.0 0.240724 Low Low
cufflinks 0.24722 0.0 1.05403 Low Low
cufflinks 9.46266 0.0 28.6522    
cufflinks 53.1907 0.0 138.281 High  

0 Strain