Gene : Phvul.007G025300 P. vulgaris v2.1
Defline:  (1 of 4) PTHR12608 - TRANSMEMBRANE PROTEIN HTP-1 RELATED Genomic Order:  250
Name:  ? Phvul.007G025300 Secondary Identifier:  ? PAC:37164345
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.007G025300 0.5kb upstream 0.5kb upstream 5438 true Chr07: 1891692-1897129 Phaseolus vulgaris
Phvul.007G025300 0.5kb upstream 0.5kb upstream 500 false Chr07: 1896630-1897129 Phaseolus vulgaris
Phvul.007G025300 0.5kb downstream 0.5kb downstream 5438 true Chr07: 1891192-1896629 Phaseolus vulgaris
Phvul.007G025300 0.5kb downstream 0.5kb downstream 500 false Chr07: 1891192-1891691 Phaseolus vulgaris
Phvul.007G025300 1.0kb upstream 1.0kb upstream 5938 true Chr07: 1891692-1897629 Phaseolus vulgaris
Phvul.007G025300 1.0kb upstream 1.0kb upstream 1000 false Chr07: 1896630-1897629 Phaseolus vulgaris
Phvul.007G025300 1.0kb downstream 1.0kb downstream 5938 true Chr07: 1890692-1896629 Phaseolus vulgaris
Phvul.007G025300 1.0kb downstream 1.0kb downstream 1000 false Chr07: 1890692-1891691 Phaseolus vulgaris
Phvul.007G025300 2.0kb upstream 2.0kb upstream 6938 true Chr07: 1891692-1898629 Phaseolus vulgaris
Phvul.007G025300 2.0kb upstream 2.0kb upstream 2000 false Chr07: 1896630-1898629 Phaseolus vulgaris
Phvul.007G025300 2.0kb downstream 2.0kb downstream 6938 true Chr07: 1889692-1896629 Phaseolus vulgaris
Phvul.007G025300 2.0kb downstream 2.0kb downstream 2000 false Chr07: 1889692-1891691 Phaseolus vulgaris
Phvul.007G025300 5.0kb upstream 5.0kb upstream 9938 true Chr07: 1891692-1901629 Phaseolus vulgaris
Phvul.007G025300 5.0kb upstream 5.0kb upstream 5000 false Chr07: 1896630-1901629 Phaseolus vulgaris
Phvul.007G025300 5.0kb downstream 5.0kb downstream 9938 true Chr07: 1886692-1896629 Phaseolus vulgaris
Phvul.007G025300 5.0kb downstream 5.0kb downstream 5000 false Chr07: 1886692-1891691 Phaseolus vulgaris
Phvul.007G025300 10.0kb upstream 10.0kb upstream 14938 true Chr07: 1891692-1906629 Phaseolus vulgaris
Phvul.007G025300 10.0kb upstream 10.0kb upstream 10000 false Chr07: 1896630-1906629 Phaseolus vulgaris
Phvul.007G025300 10.0kb downstream 10.0kb downstream 14938 true Chr07: 1881692-1896629 Phaseolus vulgaris
Phvul.007G025300 10.0kb downstream 10.0kb downstream 10000 false Chr07: 1881692-1891691 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300846 5265 Fabidae View MSA
124060465 5270 Rosid View MSA
123745262 5271 Pentapetalae View MSA
122786171 5272 Eudicot View MSA
122046225 5273 Angiosperm View MSA
121344721 5274 Embryophyte View MSA
123428725 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 52.6971 0.0 178.59 High  
cufflinks 37.7199 0.0 118.999 High  
cufflinks 40.1454 0.0 120.694 High  
cufflinks 100.938 0.0 344.547 High High
cufflinks 41.3184 0.0 141.836 High  
cufflinks 45.7181 0.0 155.545 High  
cufflinks 41.0961 0.0 120.099 High  
cufflinks 87.6896 0.0 271.151 High High
cufflinks 41.1254 0.0 121.772 High  
cufflinks 25.6521 0.0 75.057   Low
cufflinks 53.5801 0.0 156.686 High  

0 Strain