Gene : Phvul.004G077200 P. vulgaris v2.1
Defline:  (1 of 2) K12589 - exosome complex component RRP42 (RRP42, EXOSC7) Genomic Order:  805
Name:  ? Phvul.004G077200 Secondary Identifier:  ? PAC:37163187
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.004G077200 0.5kb upstream 0.5kb upstream 6630 true Chr04: 13623121-13629750 Phaseolus vulgaris
Phvul.004G077200 0.5kb upstream 0.5kb upstream 500 false Chr04: 13629251-13629750 Phaseolus vulgaris
Phvul.004G077200 0.5kb downstream 0.5kb downstream 6630 true Chr04: 13622621-13629250 Phaseolus vulgaris
Phvul.004G077200 0.5kb downstream 0.5kb downstream 500 false Chr04: 13622621-13623120 Phaseolus vulgaris
Phvul.004G077200 1.0kb upstream 1.0kb upstream 7130 true Chr04: 13623121-13630250 Phaseolus vulgaris
Phvul.004G077200 1.0kb upstream 1.0kb upstream 1000 false Chr04: 13629251-13630250 Phaseolus vulgaris
Phvul.004G077200 1.0kb downstream 1.0kb downstream 7130 true Chr04: 13622121-13629250 Phaseolus vulgaris
Phvul.004G077200 1.0kb downstream 1.0kb downstream 1000 false Chr04: 13622121-13623120 Phaseolus vulgaris
Phvul.004G077200 2.0kb upstream 2.0kb upstream 8130 true Chr04: 13623121-13631250 Phaseolus vulgaris
Phvul.004G077200 2.0kb upstream 2.0kb upstream 2000 false Chr04: 13629251-13631250 Phaseolus vulgaris
Phvul.004G077200 2.0kb downstream 2.0kb downstream 8130 true Chr04: 13621121-13629250 Phaseolus vulgaris
Phvul.004G077200 2.0kb downstream 2.0kb downstream 2000 false Chr04: 13621121-13623120 Phaseolus vulgaris
Phvul.004G077200 5.0kb upstream 5.0kb upstream 11130 true Chr04: 13623121-13634250 Phaseolus vulgaris
Phvul.004G077200 5.0kb upstream 5.0kb upstream 5000 false Chr04: 13629251-13634250 Phaseolus vulgaris
Phvul.004G077200 5.0kb downstream 5.0kb downstream 11130 true Chr04: 13618121-13629250 Phaseolus vulgaris
Phvul.004G077200 5.0kb downstream 5.0kb downstream 5000 false Chr04: 13618121-13623120 Phaseolus vulgaris
Phvul.004G077200 10.0kb upstream 10.0kb upstream 16130 true Chr04: 13623121-13639250 Phaseolus vulgaris
Phvul.004G077200 10.0kb upstream 10.0kb upstream 10000 false Chr04: 13629251-13639250 Phaseolus vulgaris
Phvul.004G077200 10.0kb downstream 10.0kb downstream 16130 true Chr04: 13613121-13629250 Phaseolus vulgaris
Phvul.004G077200 10.0kb downstream 10.0kb downstream 10000 false Chr04: 13613121-13623120 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304830 5265 Fabidae View MSA
124064835 5270 Rosid View MSA
123739797 5271 Pentapetalae View MSA
122793133 5272 Eudicot View MSA
122044791 5273 Angiosperm View MSA
121345379 5274 Embryophyte View MSA
123428075 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.11418 0.0 17.551    
cufflinks 6.93876 0.0 19.6722   High
cufflinks 3.29304 0.0 10.1192   Low
cufflinks 5.94584 0.0 17.3249    
cufflinks 3.60831 0.0 11.0782   Low
cufflinks 4.0228 0.0 12.0959    
cufflinks 5.94491 0.0 17.1286    
cufflinks 5.71531 0.0 16.4668    
cufflinks 6.0467 0.0 17.4339    
cufflinks 5.22963 0.0 15.2929    
cufflinks 4.0908 0.0 12.3515    

0 Strain