Gene : Phvul.007G029400 P. vulgaris v2.1
Defline:  (1 of 2) 6.1.1.16 - Cysteine--tRNA ligase / Cysteinyl-tRNA synthetase Genomic Order:  292
Name:  ? Phvul.007G029400 Secondary Identifier:  ? PAC:37165037
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris TRNA-CHARGING-PWY Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.007G029400 0.5kb upstream 0.5kb upstream 7130 true Chr07: 2328440-2335569 Phaseolus vulgaris
Phvul.007G029400 0.5kb upstream 0.5kb upstream 500 false Chr07: 2328440-2328939 Phaseolus vulgaris
Phvul.007G029400 0.5kb downstream 0.5kb downstream 7130 true Chr07: 2328940-2336069 Phaseolus vulgaris
Phvul.007G029400 0.5kb downstream 0.5kb downstream 500 false Chr07: 2335570-2336069 Phaseolus vulgaris
Phvul.007G029400 1.0kb upstream 1.0kb upstream 7630 true Chr07: 2327940-2335569 Phaseolus vulgaris
Phvul.007G029400 1.0kb upstream 1.0kb upstream 1000 false Chr07: 2327940-2328939 Phaseolus vulgaris
Phvul.007G029400 1.0kb downstream 1.0kb downstream 7630 true Chr07: 2328940-2336569 Phaseolus vulgaris
Phvul.007G029400 1.0kb downstream 1.0kb downstream 1000 false Chr07: 2335570-2336569 Phaseolus vulgaris
Phvul.007G029400 2.0kb upstream 2.0kb upstream 8630 true Chr07: 2326940-2335569 Phaseolus vulgaris
Phvul.007G029400 2.0kb upstream 2.0kb upstream 2000 false Chr07: 2326940-2328939 Phaseolus vulgaris
Phvul.007G029400 2.0kb downstream 2.0kb downstream 8630 true Chr07: 2328940-2337569 Phaseolus vulgaris
Phvul.007G029400 2.0kb downstream 2.0kb downstream 2000 false Chr07: 2335570-2337569 Phaseolus vulgaris
Phvul.007G029400 5.0kb upstream 5.0kb upstream 11630 true Chr07: 2323940-2335569 Phaseolus vulgaris
Phvul.007G029400 5.0kb upstream 5.0kb upstream 5000 false Chr07: 2323940-2328939 Phaseolus vulgaris
Phvul.007G029400 5.0kb downstream 5.0kb downstream 11630 true Chr07: 2328940-2340569 Phaseolus vulgaris
Phvul.007G029400 5.0kb downstream 5.0kb downstream 5000 false Chr07: 2335570-2340569 Phaseolus vulgaris
Phvul.007G029400 10.0kb upstream 10.0kb upstream 16630 true Chr07: 2318940-2335569 Phaseolus vulgaris
Phvul.007G029400 10.0kb upstream 10.0kb upstream 10000 false Chr07: 2318940-2328939 Phaseolus vulgaris
Phvul.007G029400 10.0kb downstream 10.0kb downstream 16630 true Chr07: 2328940-2345569 Phaseolus vulgaris
Phvul.007G029400 10.0kb downstream 10.0kb downstream 10000 false Chr07: 2335570-2345569 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306399 5265 Fabidae View MSA
124063129 5270 Rosid View MSA
123736819 5271 Pentapetalae View MSA
122791424 5272 Eudicot View MSA
122050932 5273 Angiosperm View MSA
121350340 5274 Embryophyte View MSA
123427761 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.9814 0.0 41.44    
cufflinks 17.5869 0.0 45.5259    
cufflinks 15.6222 0.0 40.5101    
cufflinks 17.8629 0.0 46.3106    
cufflinks 12.7813 0.0 33.5826   Low
cufflinks 16.4205 0.0 42.5492    
cufflinks 20.743 0.0 53.6169    
cufflinks 24.1262 0.0 62.4775   High
cufflinks 22.19 0.0 57.3613   High
cufflinks 20.8276 0.0 53.838    
cufflinks 16.6174 0.0 43.1249    

0 Strain