Gene : Phvul.007G028800 P. vulgaris v2.1
Defline:  (1 of 1) 6.1.1.18 - Glutamine--tRNA ligase / Glutaminyl-tRNA synthetase Genomic Order:  286
Name:  ? Phvul.007G028800 Secondary Identifier:  ? PAC:37166017
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris TRNA-CHARGING-PWY Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.007G028800 0.5kb upstream 0.5kb upstream 10340 true Chr07: 2275018-2285357 Phaseolus vulgaris
Phvul.007G028800 0.5kb upstream 0.5kb upstream 500 false Chr07: 2284858-2285357 Phaseolus vulgaris
Phvul.007G028800 0.5kb downstream 0.5kb downstream 10340 true Chr07: 2274518-2284857 Phaseolus vulgaris
Phvul.007G028800 0.5kb downstream 0.5kb downstream 500 false Chr07: 2274518-2275017 Phaseolus vulgaris
Phvul.007G028800 1.0kb upstream 1.0kb upstream 10840 true Chr07: 2275018-2285857 Phaseolus vulgaris
Phvul.007G028800 1.0kb upstream 1.0kb upstream 1000 false Chr07: 2284858-2285857 Phaseolus vulgaris
Phvul.007G028800 1.0kb downstream 1.0kb downstream 10840 true Chr07: 2274018-2284857 Phaseolus vulgaris
Phvul.007G028800 1.0kb downstream 1.0kb downstream 1000 false Chr07: 2274018-2275017 Phaseolus vulgaris
Phvul.007G028800 2.0kb upstream 2.0kb upstream 11840 true Chr07: 2275018-2286857 Phaseolus vulgaris
Phvul.007G028800 2.0kb upstream 2.0kb upstream 2000 false Chr07: 2284858-2286857 Phaseolus vulgaris
Phvul.007G028800 2.0kb downstream 2.0kb downstream 11840 true Chr07: 2273018-2284857 Phaseolus vulgaris
Phvul.007G028800 2.0kb downstream 2.0kb downstream 2000 false Chr07: 2273018-2275017 Phaseolus vulgaris
Phvul.007G028800 5.0kb upstream 5.0kb upstream 14840 true Chr07: 2275018-2289857 Phaseolus vulgaris
Phvul.007G028800 5.0kb upstream 5.0kb upstream 5000 false Chr07: 2284858-2289857 Phaseolus vulgaris
Phvul.007G028800 5.0kb downstream 5.0kb downstream 14840 true Chr07: 2270018-2284857 Phaseolus vulgaris
Phvul.007G028800 5.0kb downstream 5.0kb downstream 5000 false Chr07: 2270018-2275017 Phaseolus vulgaris
Phvul.007G028800 10.0kb upstream 10.0kb upstream 19840 true Chr07: 2275018-2294857 Phaseolus vulgaris
Phvul.007G028800 10.0kb upstream 10.0kb upstream 10000 false Chr07: 2284858-2294857 Phaseolus vulgaris
Phvul.007G028800 10.0kb downstream 10.0kb downstream 19840 true Chr07: 2265018-2284857 Phaseolus vulgaris
Phvul.007G028800 10.0kb downstream 10.0kb downstream 10000 false Chr07: 2265018-2275017 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308481 5265 Fabidae View MSA
124062151 5270 Rosid View MSA
123744952 5271 Pentapetalae View MSA
122789610 5272 Eudicot View MSA
122046880 5273 Angiosperm View MSA
121346731 5274 Embryophyte View MSA
123424701 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.756 0.0 38.1452   Low
cufflinks 26.1516 0.0 68.4214    
cufflinks 22.1415 0.0 57.5815    
cufflinks 15.8916 0.0 41.0812   Low
cufflinks 20.4571 0.0 52.979    
cufflinks 22.6415 0.0 58.8881    
cufflinks 41.5176 0.0 112.175 High High
cufflinks 40.5036 0.0 109.602 High High
cufflinks 40.164 0.0 108.068 High High
cufflinks 28.7338 0.0 75.5617    
cufflinks 21.5123 0.0 55.7953    

0 Strain